Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.49■□□□□ 0.23
APOEP02649 AC022532.1-201ENST00000624563 1728 ntBASIC16.49■□□□□ 0.23
APOEP02649 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
APOEP02649 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.49■□□□□ 0.23
APOEP02649 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
APOEP02649 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.48■□□□□ 0.23
APOEP02649 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 AC114501.2-201ENST00000439631 535 ntBASIC16.48■□□□□ 0.23
APOEP02649 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.48■□□□□ 0.23
APOEP02649 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.48■□□□□ 0.23
APOEP02649 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.48■□□□□ 0.23
APOEP02649 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.48■□□□□ 0.23
APOEP02649 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
APOEP02649 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
APOEP02649 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.48■□□□□ 0.23
APOEP02649 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC16.48■□□□□ 0.23
APOEP02649 AC004840.1-201ENST00000636359 365 ntBASIC16.48■□□□□ 0.23
APOEP02649 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.48■□□□□ 0.23
APOEP02649 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
APOEP02649 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.48■□□□□ 0.23
APOEP02649 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.47■□□□□ 0.23
APOEP02649 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
APOEP02649 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 AC073347.1-201ENST00000421633 2643 ntBASIC16.47■□□□□ 0.23
APOEP02649 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.47■□□□□ 0.23
APOEP02649 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
APOEP02649 AC236430.1-201ENST00000402231 743 ntBASIC16.47■□□□□ 0.23
APOEP02649 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.47■□□□□ 0.23
APOEP02649 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.47■□□□□ 0.23
APOEP02649 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.47■□□□□ 0.23
APOEP02649 ZFAND2B-212ENST00000444522 1199 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.47■□□□□ 0.23
APOEP02649 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC16.47■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.9 ms