Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
LDB3O75112 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.78□□□□□ -0.04
LDB3O75112 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LDB3O75112 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.78□□□□□ -0.04
LDB3O75112 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LDB3O75112 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
LDB3O75112 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 AC015922.1-201ENST00000421102 1152 ntBASIC14.78□□□□□ -0.04
LDB3O75112 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.78□□□□□ -0.04
LDB3O75112 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.78□□□□□ -0.04
LDB3O75112 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC14.78□□□□□ -0.04
LDB3O75112 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
LDB3O75112 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
LDB3O75112 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
LDB3O75112 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.77□□□□□ -0.04
LDB3O75112 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
LDB3O75112 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.77□□□□□ -0.04
LDB3O75112 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.77□□□□□ -0.04
LDB3O75112 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.04
LDB3O75112 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.77□□□□□ -0.04
LDB3O75112 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
LDB3O75112 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.04
LDB3O75112 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.77□□□□□ -0.04
LDB3O75112 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.77□□□□□ -0.04
LDB3O75112 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 MIR661-201ENST00000384842 89 ntBASIC14.77□□□□□ -0.05
LDB3O75112 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.77□□□□□ -0.05
LDB3O75112 GNAQP1-201ENST00000444815 1067 ntBASIC14.77□□□□□ -0.05
LDB3O75112 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 SERBP1P5-201ENST00000510079 1181 ntBASIC14.77□□□□□ -0.05
LDB3O75112 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.77□□□□□ -0.05
LDB3O75112 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.77□□□□□ -0.05
LDB3O75112 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.77□□□□□ -0.05
LDB3O75112 AC020658.6-201ENST00000623564 1870 ntBASIC14.77□□□□□ -0.05
LDB3O75112 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC14.77□□□□□ -0.05
LDB3O75112 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.77□□□□□ -0.05
LDB3O75112 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
LDB3O75112 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
LDB3O75112 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC14.77□□□□□ -0.05
LDB3O75112 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.77□□□□□ -0.05
LDB3O75112 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.77□□□□□ -0.05
LDB3O75112 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
LDB3O75112 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC14.77□□□□□ -0.05
LDB3O75112 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
LDB3O75112 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.76□□□□□ -0.05
LDB3O75112 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.76□□□□□ -0.05
LDB3O75112 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 61.3 ms