Protein–RNA interactions for Protein: Q9P0J7

KCMF1, E3 ubiquitin-protein ligase KCMF1, humanhuman

Predictions only

Length 381 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KCMF1Q9P0J7 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 ZNF30-202ENST00000439785 2651 ntAPPRIS P4 TSL 5 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.92□□□□□ -0.02
KCMF1Q9P0J7 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 BTBD7P1-201ENST00000447253 1453 ntBASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 KRT18P64-201ENST00000434946 1219 ntBASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 UGT1A2P-201ENST00000454886 866 ntBASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 LINC01115-203ENST00000606068 577 ntBASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 AC004461.2-201ENST00000629517 803 ntBASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 AC020658.6-201ENST00000623564 1870 ntBASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
KCMF1Q9P0J7 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 CASK-202ENST00000378158 3848 ntTSL 5 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 AC127383.1-201ENST00000444697 1800 ntBASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 AC004840.1-201ENST00000636359 365 ntBASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
KCMF1Q9P0J7 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms