Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.21■□□□□ 0.19
USP29Q9HBJ7 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
USP29Q9HBJ7 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.21■□□□□ 0.18
USP29Q9HBJ7 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
USP29Q9HBJ7 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AC241585.1-201ENST00000433527 519 ntBASIC16.2■□□□□ 0.18
USP29Q9HBJ7 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AC005225.4-201ENST00000557330 545 ntBASIC16.2■□□□□ 0.18
USP29Q9HBJ7 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AC027307.3-201ENST00000594262 1100 ntBASIC16.2■□□□□ 0.18
USP29Q9HBJ7 LINC02560-201ENST00000596379 459 ntBASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AL358472.5-202ENST00000641448 1267 ntBASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
USP29Q9HBJ7 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 KRT8P12-202ENST00000472924 1397 ntBASIC16.19■□□□□ 0.18
USP29Q9HBJ7 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 MIR4453-201ENST00000584019 89 ntBASIC16.19■□□□□ 0.18
USP29Q9HBJ7 AC012645.4-201ENST00000610691 1061 ntBASIC16.19■□□□□ 0.18
USP29Q9HBJ7 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
USP29Q9HBJ7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC16.18■□□□□ 0.18
USP29Q9HBJ7 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms