Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 RNMTL1P1-201ENST00000454103 560 ntBASIC20.97■□□□□ 0.95
NPHP3Q7Z494 SZRD1-203ENST00000471507 892 ntAPPRIS ALT1 TSL 2 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 AC019193.1-201ENST00000506678 823 ntBASIC20.97■□□□□ 0.95
NPHP3Q7Z494 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 AC011491.1-203ENST00000637688 543 ntBASIC20.97■□□□□ 0.95
NPHP3Q7Z494 HLA-C-210ENST00000640219 976 ntBASIC20.97■□□□□ 0.95
NPHP3Q7Z494 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NPHP3Q7Z494 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 CMC1-204ENST00000423894 549 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 CEP164P1-201ENST00000455142 418 ntBASIC20.96■□□□□ 0.95
NPHP3Q7Z494 TUBB8P8-201ENST00000458717 1058 ntBASIC20.96■□□□□ 0.95
NPHP3Q7Z494 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 AC103988.2-201ENST00000561804 725 ntBASIC20.96■□□□□ 0.95
NPHP3Q7Z494 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 AL603764.1-201ENST00000636452 321 ntBASIC20.96■□□□□ 0.95
NPHP3Q7Z494 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NPHP3Q7Z494 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC20.95■□□□□ 0.95
NPHP3Q7Z494 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
NPHP3Q7Z494 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC20.95■□□□□ 0.95
NPHP3Q7Z494 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 ALOX12P2-203ENST00000570921 1945 ntBASIC20.95■□□□□ 0.94
NPHP3Q7Z494 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 AC098935.1-201ENST00000446057 611 ntBASIC20.95■□□□□ 0.94
NPHP3Q7Z494 AL353637.1-201ENST00000451571 732 ntBASIC20.95■□□□□ 0.94
NPHP3Q7Z494 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 AC020922.3-201ENST00000595064 547 ntBASIC20.95■□□□□ 0.94
NPHP3Q7Z494 RN7SL736P-201ENST00000613111 269 ntBASIC20.95■□□□□ 0.94
NPHP3Q7Z494 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 COX6A1P2-201ENST00000620597 330 ntBASIC20.95■□□□□ 0.94
NPHP3Q7Z494 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 AC104667.2-202ENST00000452801 1301 ntTSL 2 BASIC20.95■□□□□ 0.94
NPHP3Q7Z494 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 AC006449.6-201ENST00000612330 2296 ntBASIC20.94■□□□□ 0.94
NPHP3Q7Z494 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms