Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 NME2-201ENST00000393183 568 ntTSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 TOMM22P5-201ENST00000416399 439 ntBASIC16.97■□□□□ 0.31
KRT39Q6A163 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.97■□□□□ 0.31
KRT39Q6A163 BASP1P1-201ENST00000430708 665 ntBASIC16.97■□□□□ 0.31
KRT39Q6A163 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.97■□□□□ 0.31
KRT39Q6A163 AC114501.2-201ENST00000439631 535 ntBASIC16.97■□□□□ 0.31
KRT39Q6A163 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.97■□□□□ 0.31
KRT39Q6A163 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.97■□□□□ 0.31
KRT39Q6A163 AC005498.2-205ENST00000593218 784 ntBASIC16.97■□□□□ 0.31
KRT39Q6A163 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 AC022144.1-201ENST00000602255 1580 ntBASIC16.97■□□□□ 0.31
KRT39Q6A163 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
KRT39Q6A163 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
KRT39Q6A163 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
KRT39Q6A163 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.96■□□□□ 0.31
KRT39Q6A163 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 AL512638.1-201ENST00000457493 794 ntBASIC16.96■□□□□ 0.31
KRT39Q6A163 RAB35-202ENST00000534951 939 ntTSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.96■□□□□ 0.31
KRT39Q6A163 AC004461.2-201ENST00000629517 803 ntBASIC16.96■□□□□ 0.31
KRT39Q6A163 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.96■□□□□ 0.31
KRT39Q6A163 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 AC112693.3-201ENST00000624819 1983 ntBASIC16.96■□□□□ 0.31
KRT39Q6A163 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
KRT39Q6A163 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
KRT39Q6A163 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
KRT39Q6A163 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
KRT39Q6A163 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
KRT39Q6A163 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
KRT39Q6A163 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.96■□□□□ 0.3
KRT39Q6A163 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
KRT39Q6A163 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
KRT39Q6A163 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC16.95■□□□□ 0.3
KRT39Q6A163 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
KRT39Q6A163 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC16.95■□□□□ 0.3
KRT39Q6A163 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC16.95■□□□□ 0.3
KRT39Q6A163 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.95■□□□□ 0.3
KRT39Q6A163 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
KRT39Q6A163 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.95■□□□□ 0.3
KRT39Q6A163 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.95■□□□□ 0.3
KRT39Q6A163 AC093214.1-201ENST00000511688 1107 ntBASIC16.95■□□□□ 0.3
KRT39Q6A163 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.95■□□□□ 0.3
KRT39Q6A163 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
KRT39Q6A163 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
KRT39Q6A163 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.95■□□□□ 0.3
KRT39Q6A163 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.95■□□□□ 0.3
KRT39Q6A163 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms