Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 MRPS18AP1-201ENST00000414458 589 ntBASIC14.92□□□□□ -0.02
LIM2P55344 AC114501.2-201ENST00000439631 535 ntBASIC14.92□□□□□ -0.02
LIM2P55344 USP40-206ENST00000443711 628 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC14.92□□□□□ -0.02
LIM2P55344 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 INGX-202ENST00000489074 768 ntBASIC14.92□□□□□ -0.02
LIM2P55344 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.92□□□□□ -0.02
LIM2P55344 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC14.92□□□□□ -0.02
LIM2P55344 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.92□□□□□ -0.02
LIM2P55344 LINC01115-203ENST00000606068 577 ntBASIC14.92□□□□□ -0.02
LIM2P55344 AL355385.1-201ENST00000606123 409 ntBASIC14.92□□□□□ -0.02
LIM2P55344 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC14.92□□□□□ -0.02
LIM2P55344 AC068418.2-201ENST00000577309 3703 ntBASIC14.92□□□□□ -0.02
LIM2P55344 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.92□□□□□ -0.02
LIM2P55344 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.92□□□□□ -0.02
LIM2P55344 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
LIM2P55344 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.91□□□□□ -0.02
LIM2P55344 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.91□□□□□ -0.02
LIM2P55344 RPL13P2-201ENST00000440687 659 ntBASIC14.91□□□□□ -0.02
LIM2P55344 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC14.91□□□□□ -0.02
LIM2P55344 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.91□□□□□ -0.02
LIM2P55344 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.91□□□□□ -0.02
LIM2P55344 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 SLED1-202ENST00000512051 380 ntBASIC14.91□□□□□ -0.02
LIM2P55344 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 INO80C-206ENST00000586489 594 ntTSL 3 BASIC14.91□□□□□ -0.02
LIM2P55344 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.91□□□□□ -0.02
LIM2P55344 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 5S_rRNA.22-201ENST00000614916 106 ntBASIC14.91□□□□□ -0.02
LIM2P55344 AC004461.2-201ENST00000629517 803 ntBASIC14.91□□□□□ -0.02
LIM2P55344 SFT2D2-204ENST00000630869 1073 ntTSL 4 BASIC14.91□□□□□ -0.02
LIM2P55344 AC004840.1-201ENST00000636359 365 ntBASIC14.91□□□□□ -0.02
LIM2P55344 AF228730.6-201ENST00000641497 218 ntBASIC14.91□□□□□ -0.02
LIM2P55344 AC084121.3-201ENST00000641716 218 ntBASIC14.91□□□□□ -0.02
LIM2P55344 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 TMBIM7P-203ENST00000641617 1718 ntBASIC14.91□□□□□ -0.02
LIM2P55344 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.91□□□□□ -0.02
LIM2P55344 AC006486.2-201ENST00000624246 2199 ntBASIC14.91□□□□□ -0.02
LIM2P55344 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.91□□□□□ -0.02
LIM2P55344 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 FER1L4-210ENST00000615531 5998 ntBASIC14.91□□□□□ -0.02
LIM2P55344 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LIM2P55344 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms