Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 INE1-201ENST00000456273 945 ntBASIC14.32□□□□□ -0.12
HOXD4P09016 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.32□□□□□ -0.12
HOXD4P09016 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
HOXD4P09016 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC14.32□□□□□ -0.12
HOXD4P09016 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
HOXD4P09016 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
HOXD4P09016 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 HLA-A-202ENST00000376806 1854 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.31□□□□□ -0.12
HOXD4P09016 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 AL512384.1-201ENST00000406683 331 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 NEU3-203ENST00000529024 581 ntTSL 3 BASIC14.31□□□□□ -0.12
HOXD4P09016 HILS1-202ENST00000545329 423 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC14.31□□□□□ -0.12
HOXD4P09016 AC025048.3-201ENST00000590609 569 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 AC093726.1-201ENST00000608064 963 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 AC017083.2-201ENST00000608069 979 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 AL162274.1-201ENST00000617191 1098 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 AC005702.4-201ENST00000618393 416 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 IGHV3-72-202ENST00000621503 303 ntBASIC14.31□□□□□ -0.12
HOXD4P09016 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.31□□□□□ -0.12
HOXD4P09016 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
HOXD4P09016 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC14.31□□□□□ -0.12
HOXD4P09016 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
HOXD4P09016 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC14.3□□□□□ -0.12
HOXD4P09016 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 AC026748.1-201ENST00000624349 3251 ntBASIC14.3□□□□□ -0.12
HOXD4P09016 TMCC2-202ENST00000330675 2780 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
HOXD4P09016 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms