Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
SDCBPO00560 NME4-212ENST00000621774 904 ntTSL 3 BASIC13.46□□□□□ -0.25
SDCBPO00560 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC13.46□□□□□ -0.25
SDCBPO00560 AC092865.6-201ENST00000642101 219 ntBASIC13.46□□□□□ -0.25
SDCBPO00560 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC13.46□□□□□ -0.25
SDCBPO00560 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
SDCBPO00560 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
SDCBPO00560 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
SDCBPO00560 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
SDCBPO00560 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.26
SDCBPO00560 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SDCBPO00560 CNTNAP3P2-201ENST00000617175 3861 ntBASIC13.46□□□□□ -0.26
SDCBPO00560 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.46□□□□□ -0.26
SDCBPO00560 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC13.46□□□□□ -0.26
SDCBPO00560 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC13.46□□□□□ -0.26
SDCBPO00560 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC13.46□□□□□ -0.26
SDCBPO00560 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
SDCBPO00560 SLCO6A1-205ENST00000506729 2689 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
SDCBPO00560 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 LRRFIP1P1-201ENST00000498774 2246 ntBASIC13.45□□□□□ -0.26
SDCBPO00560 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 FMR1-203ENST00000370470 1774 ntTSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 PCNX1-202ENST00000439984 6988 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC13.45□□□□□ -0.26
SDCBPO00560 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC13.45□□□□□ -0.26
SDCBPO00560 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 PARN-202ENST00000420015 2360 ntTSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.45□□□□□ -0.26
SDCBPO00560 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
SDCBPO00560 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
SDCBPO00560 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC13.45□□□□□ -0.26
SDCBPO00560 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC13.44□□□□□ -0.26
SDCBPO00560 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 CNDP2-201ENST00000324262 5130 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.44□□□□□ -0.26
SDCBPO00560 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC13.44□□□□□ -0.26
SDCBPO00560 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
SDCBPO00560 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
SDCBPO00560 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC13.44□□□□□ -0.26
SDCBPO00560 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC13.44□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms