Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AC241585.1-201ENST00000433527 519 ntBASIC15.33■□□□□ 0.04
VPS4AQ9UN37 ATP5G2P4-201ENST00000442175 420 ntBASIC15.33■□□□□ 0.04
VPS4AQ9UN37 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AL596325.1-201ENST00000563991 1082 ntBASIC15.33■□□□□ 0.04
VPS4AQ9UN37 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AC022532.1-201ENST00000624563 1728 ntBASIC15.33■□□□□ 0.04
VPS4AQ9UN37 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4AQ9UN37 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 C5orf30-202ENST00000510890 2933 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4AQ9UN37 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.31■□□□□ 0.04
VPS4AQ9UN37 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 SPDYE14P-201ENST00000442619 822 ntBASIC15.31■□□□□ 0.04
VPS4AQ9UN37 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 NAA50-208ENST00000497255 789 ntTSL 5 BASIC15.31■□□□□ 0.04
VPS4AQ9UN37 SERBP1P5-201ENST00000510079 1181 ntBASIC15.31■□□□□ 0.04
VPS4AQ9UN37 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms