Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.13□□□□□ -0.15
SCN1BQ07699 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
SCN1BQ07699 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SCN1BQ07699 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SCN1BQ07699 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 AC148477.4-201ENST00000613430 1793 ntBASIC14.13□□□□□ -0.15
SCN1BQ07699 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SCN1BQ07699 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC14.13□□□□□ -0.15
SCN1BQ07699 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
SCN1BQ07699 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
SCN1BQ07699 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.13□□□□□ -0.15
SCN1BQ07699 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 AL592424.1-201ENST00000563624 1536 ntBASIC14.12□□□□□ -0.15
SCN1BQ07699 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
SCN1BQ07699 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC14.12□□□□□ -0.15
SCN1BQ07699 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 AF186996.4-201ENST00000467186 377 ntBASIC14.12□□□□□ -0.15
SCN1BQ07699 AC136632.2-201ENST00000512891 861 ntBASIC14.12□□□□□ -0.15
SCN1BQ07699 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC14.12□□□□□ -0.15
SCN1BQ07699 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 CYGB-205ENST00000590175 830 ntTSL 3 BASIC14.12□□□□□ -0.15
SCN1BQ07699 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC14.12□□□□□ -0.15
SCN1BQ07699 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
SCN1BQ07699 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 USP28-214ENST00000545540 3431 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
SCN1BQ07699 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC14.12□□□□□ -0.15
SCN1BQ07699 ACER2-201ENST00000340967 2238 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC14.11□□□□□ -0.15
SCN1BQ07699 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 PMS2P1-201ENST00000431037 1228 ntBASIC14.11□□□□□ -0.15
SCN1BQ07699 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.11□□□□□ -0.15
SCN1BQ07699 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC14.11□□□□□ -0.15
SCN1BQ07699 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC14.11□□□□□ -0.15
SCN1BQ07699 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 REXO1L3P-201ENST00000622202 1288 ntBASIC14.11□□□□□ -0.15
SCN1BQ07699 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.11□□□□□ -0.15
SCN1BQ07699 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 PDHX-203ENST00000448838 2653 ntTSL 5 BASIC14.11□□□□□ -0.15
SCN1BQ07699 GRSF1-201ENST00000254799 6666 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
SCN1BQ07699 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
SCN1BQ07699 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.9 ms