Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 RN7SL618P-201ENST00000477850 296 ntBASIC16.47■□□□□ 0.23
HDAC4P56524 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC16.47■□□□□ 0.23
HDAC4P56524 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 AJ003147.2-201ENST00000576468 629 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.47■□□□□ 0.23
HDAC4P56524 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.47■□□□□ 0.23
HDAC4P56524 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.47■□□□□ 0.23
HDAC4P56524 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 AC092384.3-202ENST00000564646 2873 ntBASIC16.47■□□□□ 0.23
HDAC4P56524 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HDAC4P56524 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDAC4P56524 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC4P56524 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC4P56524 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.46■□□□□ 0.23
HDAC4P56524 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
HDAC4P56524 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.46■□□□□ 0.23
HDAC4P56524 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.46■□□□□ 0.23
HDAC4P56524 AC055876.3-201ENST00000431496 288 ntBASIC16.46■□□□□ 0.23
HDAC4P56524 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC16.46■□□□□ 0.23
HDAC4P56524 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC16.46■□□□□ 0.23
HDAC4P56524 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.46■□□□□ 0.23
HDAC4P56524 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC16.46■□□□□ 0.23
HDAC4P56524 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 AC138649.4-201ENST00000612222 287 ntBASIC16.46■□□□□ 0.23
HDAC4P56524 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC4P56524 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.46■□□□□ 0.23
HDAC4P56524 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.46■□□□□ 0.23
HDAC4P56524 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HDAC4P56524 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDAC4P56524 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDAC4P56524 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
HDAC4P56524 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDAC4P56524 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 PPT1-215ENST00000641471 2368 ntBASIC16.45■□□□□ 0.22
HDAC4P56524 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDAC4P56524 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDAC4P56524 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC16.45■□□□□ 0.22
HDAC4P56524 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms