Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 LINC00339-202ENST00000416769 1077 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 TRAPPC2L-212ENST00000567312 499 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 KRT17P4-206ENST00000584151 719 ntTSL 4 BASIC15.92■□□□□ 0.14
COL6A3P12111 AL157813.1-201ENST00000612996 587 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A3P12111 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC15.92■□□□□ 0.14
COL6A3P12111 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL6A3P12111 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.92■□□□□ 0.14
COL6A3P12111 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC15.92■□□□□ 0.14
COL6A3P12111 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC15.92■□□□□ 0.14
COL6A3P12111 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
COL6A3P12111 AL583805.1-201ENST00000391389 531 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 MAFTRR-203ENST00000567993 685 ntTSL 3 BASIC15.92■□□□□ 0.14
COL6A3P12111 AC008805.1-201ENST00000590892 364 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 LINC02018-201ENST00000608169 1268 ntTSL 4 BASIC15.92■□□□□ 0.14
COL6A3P12111 MIR6893-201ENST00000613458 69 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 AP001184.1-201ENST00000637936 376 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 AC012313.1-201ENST00000593393 3059 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 AC090164.3-201ENST00000610780 2143 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
COL6A3P12111 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
COL6A3P12111 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC15.92■□□□□ 0.14
COL6A3P12111 BICD1-207ENST00000551848 1962 ntBASIC15.92■□□□□ 0.14
COL6A3P12111 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL6A3P12111 MAPK3-204ENST00000395200 997 ntTSL 3 BASIC15.91■□□□□ 0.14
COL6A3P12111 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 PRR34-AS1-203ENST00000451166 877 ntTSL 3 BASIC15.91■□□□□ 0.14
COL6A3P12111 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC15.91■□□□□ 0.14
COL6A3P12111 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 NAV1-210ENST00000593583 726 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 AC021321.1-201ENST00000607397 1113 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 CFL1P6-201ENST00000400899 494 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 AADACL2-AS1-202ENST00000483843 628 ntTSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 RN7SL470P-201ENST00000583069 259 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.91■□□□□ 0.14
COL6A3P12111 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 CTSW-204ENST00000528419 1341 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 RFPL3-201ENST00000249007 1488 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL6A3P12111 AC092171.3-201ENST00000610122 2651 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 NME4-203ENST00000397722 1232 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 DKKL1P1-201ENST00000400550 698 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
COL6A3P12111 VDAC1P1-201ENST00000439229 848 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 AC087392.5-201ENST00000612517 489 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC15.91■□□□□ 0.14
COL6A3P12111 LINC01815-202ENST00000641468 1409 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC15.91■□□□□ 0.14
COL6A3P12111 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC15.91■□□□□ 0.14
COL6A3P12111 AL158070.2-201ENST00000623713 1621 ntBASIC15.91■□□□□ 0.14
COL6A3P12111 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 KRT8P14-201ENST00000414254 1442 ntBASIC15.9■□□□□ 0.14
COL6A3P12111 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 BGLAP-201ENST00000368272 732 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 AL450487.2-201ENST00000615934 407 ntBASIC15.9■□□□□ 0.14
COL6A3P12111 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 ADSL-201ENST00000216194 1620 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.9■□□□□ 0.14
COL6A3P12111 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 SIGLEC6-204ENST00000391797 1391 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
COL6A3P12111 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
COL6A3P12111 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms