Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 PHKG1P2-201ENST00000457537 863 ntBASIC16.54■□□□□ 0.24
APOEP02649 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC16.54■□□□□ 0.24
APOEP02649 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.54■□□□□ 0.24
APOEP02649 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.54■□□□□ 0.24
APOEP02649 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.54■□□□□ 0.24
APOEP02649 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.54■□□□□ 0.24
APOEP02649 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.54■□□□□ 0.24
APOEP02649 AC092364.2-202ENST00000597012 1073 ntBASIC16.54■□□□□ 0.24
APOEP02649 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOEP02649 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.54■□□□□ 0.24
APOEP02649 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
APOEP02649 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC16.54■□□□□ 0.24
APOEP02649 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOEP02649 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOEP02649 MIR600HG-201ENST00000449175 5984 ntBASIC16.54■□□□□ 0.24
APOEP02649 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
APOEP02649 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
APOEP02649 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
APOEP02649 BTBD7P1-201ENST00000447253 1453 ntBASIC16.54■□□□□ 0.24
APOEP02649 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
APOEP02649 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC16.53■□□□□ 0.24
APOEP02649 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
APOEP02649 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
APOEP02649 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC16.53■□□□□ 0.24
APOEP02649 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC16.53■□□□□ 0.24
APOEP02649 TSPY16P-201ENST00000449843 468 ntBASIC16.53■□□□□ 0.24
APOEP02649 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.53■□□□□ 0.24
APOEP02649 AC044860.1-202ENST00000559481 777 ntBASIC16.53■□□□□ 0.24
APOEP02649 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.53■□□□□ 0.24
APOEP02649 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC16.53■□□□□ 0.24
APOEP02649 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
APOEP02649 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.53■□□□□ 0.24
APOEP02649 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
APOEP02649 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.53■□□□□ 0.24
APOEP02649 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
APOEP02649 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC16.52■□□□□ 0.24
APOEP02649 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.52■□□□□ 0.24
APOEP02649 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC16.52■□□□□ 0.24
APOEP02649 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
APOEP02649 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.52■□□□□ 0.24
APOEP02649 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC16.52■□□□□ 0.24
APOEP02649 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.52■□□□□ 0.24
APOEP02649 MRPS18AP1-201ENST00000414458 589 ntBASIC16.52■□□□□ 0.24
APOEP02649 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC16.52■□□□□ 0.24
APOEP02649 UGT1A2P-201ENST00000454886 866 ntBASIC16.52■□□□□ 0.24
APOEP02649 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.52■□□□□ 0.24
APOEP02649 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.52■□□□□ 0.24
APOEP02649 AC009407.1-201ENST00000568958 598 ntBASIC16.52■□□□□ 0.24
APOEP02649 MIR4745-201ENST00000577608 62 ntBASIC16.52■□□□□ 0.24
APOEP02649 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC16.52■□□□□ 0.24
APOEP02649 AL109936.8-201ENST00000641772 604 ntBASIC16.52■□□□□ 0.24
APOEP02649 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.24
APOEP02649 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.52■□□□□ 0.24
APOEP02649 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
APOEP02649 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
APOEP02649 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
APOEP02649 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.52■□□□□ 0.23
APOEP02649 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
APOEP02649 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.52■□□□□ 0.23
APOEP02649 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
APOEP02649 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
APOEP02649 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.52■□□□□ 0.23
APOEP02649 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
APOEP02649 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
APOEP02649 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC16.52■□□□□ 0.23
APOEP02649 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
APOEP02649 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
APOEP02649 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.51■□□□□ 0.23
APOEP02649 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
APOEP02649 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 54.2 ms