Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 SPDYE18-201ENST00000510091 1050 ntBASIC18.17■□□□□ 0.5
CTDNEP1O95476 SDHAP3-202ENST00000515467 728 ntBASIC18.17■□□□□ 0.5
CTDNEP1O95476 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 AC004461.2-201ENST00000629517 803 ntBASIC18.17■□□□□ 0.5
CTDNEP1O95476 RAB34-223ENST00000636154 730 ntTSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CTDNEP1O95476 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CTDNEP1O95476 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 HNRNPA3P1-201ENST00000401429 1139 ntBASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 HNRNPA3P5-201ENST00000455201 833 ntBASIC18.16■□□□□ 0.5
CTDNEP1O95476 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AC004790.1-201ENST00000612686 536 ntBASIC18.16■□□□□ 0.5
CTDNEP1O95476 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 KLHL21-202ENST00000377663 6445 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 AL121723.1-201ENST00000445194 1519 ntBASIC18.16■□□□□ 0.5
CTDNEP1O95476 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CTDNEP1O95476 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC18.16■□□□□ 0.5
CTDNEP1O95476 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 RER1-203ENST00000378513 3000 ntTSL 3 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CTDNEP1O95476 AC055876.3-201ENST00000431496 288 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 AC114501.2-201ENST00000439631 535 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 AL589987.1-201ENST00000453380 819 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 AC004890.2-204ENST00000481968 304 ntBASIC18.15■□□□□ 0.5
CTDNEP1O95476 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC18.15■□□□□ 0.5
CTDNEP1O95476 SSH2-210ENST00000582084 560 ntTSL 3 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms