Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SIX3O95343 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
SIX3O95343 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
SIX3O95343 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.43■□□□□ 0.06
SIX3O95343 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.42■□□□□ 0.06
SIX3O95343 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SIX3O95343 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
SIX3O95343 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC15.42■□□□□ 0.06
SIX3O95343 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
SIX3O95343 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC15.42■□□□□ 0.06
SIX3O95343 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.42■□□□□ 0.06
SIX3O95343 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.42■□□□□ 0.06
SIX3O95343 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 AL627223.1-201ENST00000416693 442 ntBASIC15.42■□□□□ 0.06
SIX3O95343 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.42■□□□□ 0.06
SIX3O95343 GPS2P2-201ENST00000430745 888 ntBASIC15.42■□□□□ 0.06
SIX3O95343 NME4-207ENST00000450036 985 ntTSL 3 BASIC15.42■□□□□ 0.06
SIX3O95343 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
SIX3O95343 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 SPIB-207ENST00000597855 564 ntTSL 4 BASIC15.42■□□□□ 0.06
SIX3O95343 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.42■□□□□ 0.06
SIX3O95343 AC018529.1-201ENST00000613063 361 ntBASIC15.42■□□□□ 0.06
SIX3O95343 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC15.42■□□□□ 0.06
SIX3O95343 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.42■□□□□ 0.06
SIX3O95343 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
SIX3O95343 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC15.42■□□□□ 0.06
SIX3O95343 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
SIX3O95343 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
SIX3O95343 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC15.41■□□□□ 0.06
SIX3O95343 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 RBM39-205ENST00000397370 612 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 AL353705.2-201ENST00000428243 662 ntBASIC15.41■□□□□ 0.06
SIX3O95343 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC15.41■□□□□ 0.06
SIX3O95343 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 YBX1P5-201ENST00000509441 847 ntBASIC15.41■□□□□ 0.06
SIX3O95343 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.41■□□□□ 0.06
SIX3O95343 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC15.41■□□□□ 0.06
SIX3O95343 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.41■□□□□ 0.06
SIX3O95343 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC15.41■□□□□ 0.06
SIX3O95343 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
SIX3O95343 AC106881.1-201ENST00000605849 3329 ntBASIC15.41■□□□□ 0.06
SIX3O95343 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
SIX3O95343 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 AGAP7P-201ENST00000582299 2062 ntBASIC15.4■□□□□ 0.06
SIX3O95343 AGAP14-201ENST00000624701 2060 ntBASIC15.4■□□□□ 0.06
SIX3O95343 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 AC023024.2-201ENST00000623561 1993 ntBASIC15.4■□□□□ 0.06
SIX3O95343 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.4■□□□□ 0.06
SIX3O95343 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
SIX3O95343 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms