Protein–RNA interactions for Protein: Q9Y4C1

KDM3A, Lysine-specific demethylase 3A, humanhuman

Predictions only

Length 1,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM3AQ9Y4C1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
KDM3AQ9Y4C1 AC138932.3-201ENST00000567634 1902 ntBASIC26.38■■□□□ 1.81
KDM3AQ9Y4C1 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
KDM3AQ9Y4C1 KRT18P24-201ENST00000344739 1156 ntBASIC26.38■■□□□ 1.81
KDM3AQ9Y4C1 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
KDM3AQ9Y4C1 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC26.37■■□□□ 1.81
KDM3AQ9Y4C1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
KDM3AQ9Y4C1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
KDM3AQ9Y4C1 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
KDM3AQ9Y4C1 AC239859.2-201ENST00000444165 318 ntBASIC26.37■■□□□ 1.81
KDM3AQ9Y4C1 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
KDM3AQ9Y4C1 AP003733.4-201ENST00000623785 1697 ntBASIC26.35■■□□□ 1.81
KDM3AQ9Y4C1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC26.35■■□□□ 1.81
KDM3AQ9Y4C1 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
KDM3AQ9Y4C1 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC26.35■■□□□ 1.81
KDM3AQ9Y4C1 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC26.35■■□□□ 1.81
KDM3AQ9Y4C1 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
KDM3AQ9Y4C1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC26.34■■□□□ 1.81
KDM3AQ9Y4C1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 THA1P-201ENST00000590384 1145 ntBASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC26.33■■□□□ 1.81
KDM3AQ9Y4C1 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.33■■□□□ 1.8
KDM3AQ9Y4C1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC26.32■■□□□ 1.8
KDM3AQ9Y4C1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC26.32■■□□□ 1.8
KDM3AQ9Y4C1 AL356441.2-201ENST00000443009 864 ntBASIC26.32■■□□□ 1.8
KDM3AQ9Y4C1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
KDM3AQ9Y4C1 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 SSSCA1-AS1-201ENST00000567594 614 ntBASIC26.31■■□□□ 1.8
KDM3AQ9Y4C1 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
KDM3AQ9Y4C1 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
KDM3AQ9Y4C1 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
KDM3AQ9Y4C1 AC131212.1-201ENST00000613771 668 ntBASIC26.3■■□□□ 1.8
KDM3AQ9Y4C1 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC26.3■■□□□ 1.8
KDM3AQ9Y4C1 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
KDM3AQ9Y4C1 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KDM3AQ9Y4C1 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KDM3AQ9Y4C1 CREM-229ENST00000474362 1030 ntTSL 2 BASIC26.29■■□□□ 1.8
KDM3AQ9Y4C1 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC26.29■■□□□ 1.8
KDM3AQ9Y4C1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
KDM3AQ9Y4C1 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
KDM3AQ9Y4C1 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
KDM3AQ9Y4C1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC26.27■■□□□ 1.8
KDM3AQ9Y4C1 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC26.27■■□□□ 1.8
KDM3AQ9Y4C1 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC26.27■■□□□ 1.8
KDM3AQ9Y4C1 BX664725.1-201ENST00000438252 379 ntBASIC26.27■■□□□ 1.8
KDM3AQ9Y4C1 PKIB-205ENST00000368452 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
KDM3AQ9Y4C1 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC26.27■■□□□ 1.8
KDM3AQ9Y4C1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 AC120024.1-201ENST00000562672 995 ntBASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 AC137630.3-201ENST00000607245 391 ntBASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
KDM3AQ9Y4C1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
KDM3AQ9Y4C1 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC26.25■■□□□ 1.79
KDM3AQ9Y4C1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
KDM3AQ9Y4C1 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC26.25■■□□□ 1.79
KDM3AQ9Y4C1 KRT125P-201ENST00000546827 989 ntBASIC26.25■■□□□ 1.79
KDM3AQ9Y4C1 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
KDM3AQ9Y4C1 AC090877.2-201ENST00000558441 1738 ntBASIC26.24■■□□□ 1.79
KDM3AQ9Y4C1 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
KDM3AQ9Y4C1 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
KDM3AQ9Y4C1 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC26.24■■□□□ 1.79
KDM3AQ9Y4C1 AC011551.1-201ENST00000614101 683 ntBASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms