Protein–RNA interactions for Protein: Q9Y2J0

RPH3A, Rabphilin-3A, humanhuman

Predicted RBP Predictions only

Length 694 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPH3AQ9Y2J0 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 AC131212.1-201ENST00000613771 668 ntBASIC21.29■■□□□ 1
RPH3AQ9Y2J0 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RPH3AQ9Y2J0 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.28■■□□□ 1
RPH3AQ9Y2J0 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RPH3AQ9Y2J0 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC21.28■■□□□ 1
RPH3AQ9Y2J0 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.28■■□□□ 1
RPH3AQ9Y2J0 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RPH3AQ9Y2J0 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RPH3AQ9Y2J0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RPH3AQ9Y2J0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
RPH3AQ9Y2J0 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.27■■□□□ 1
RPH3AQ9Y2J0 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC21.27■■□□□ 1
RPH3AQ9Y2J0 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RPH3AQ9Y2J0 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RPH3AQ9Y2J0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.26■□□□□ 0.99
RPH3AQ9Y2J0 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RPH3AQ9Y2J0 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RPH3AQ9Y2J0 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RPH3AQ9Y2J0 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.25■□□□□ 0.99
RPH3AQ9Y2J0 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 MIR935-201ENST00000401179 91 ntBASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 MYL12B-203ENST00000581193 1249 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 AC090877.2-201ENST00000558441 1738 ntBASIC21.24■□□□□ 0.99
RPH3AQ9Y2J0 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 AC011551.1-201ENST00000614101 683 ntBASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 AC022211.4-201ENST00000625094 2161 ntBASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RPH3AQ9Y2J0 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 MIR4281-201ENST00000580852 62 ntBASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RPH3AQ9Y2J0 AC142381.3-201ENST00000568208 1670 ntBASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 HTRA2-202ENST00000352222 1450 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 ST20-MTHFS-201ENST00000479961 859 ntAPPRIS P1 TSL 3 BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.21■□□□□ 0.99
RPH3AQ9Y2J0 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPH3AQ9Y2J0 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPH3AQ9Y2J0 AC239859.2-201ENST00000444165 318 ntBASIC21.2■□□□□ 0.98
RPH3AQ9Y2J0 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
RPH3AQ9Y2J0 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPH3AQ9Y2J0 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPH3AQ9Y2J0 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.19■□□□□ 0.98
RPH3AQ9Y2J0 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
RPH3AQ9Y2J0 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 80.6 ms