Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CHMP1AQ9HD42 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 TPT1-202ENST00000379055 948 ntTSL 2 BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 AC060814.1-201ENST00000554326 538 ntBASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 MOB2-207ENST00000614710 705 ntTSL 5 BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
CHMP1AQ9HD42 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 SMPD5-203ENST00000639008 1464 ntBASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 EED-207ENST00000528180 1745 ntTSL 5 BASIC19.9■□□□□ 0.78
CHMP1AQ9HD42 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHMP1AQ9HD42 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHMP1AQ9HD42 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CHMP1AQ9HD42 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 BANF1-208ENST00000533166 1135 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 AC025884.2-201ENST00000553429 711 ntBASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.77
CHMP1AQ9HD42 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 MIR7108-201ENST00000614319 87 ntBASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CHMP1AQ9HD42 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 REST-210ENST00000638187 1334 ntTSL 5 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 PKD1P6-201ENST00000343738 4769 ntBASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC19.87■□□□□ 0.77
CHMP1AQ9HD42 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
CHMP1AQ9HD42 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP1AQ9HD42 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CHMP1AQ9HD42 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC19.86■□□□□ 0.77
CHMP1AQ9HD42 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.86■□□□□ 0.77
CHMP1AQ9HD42 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
CHMP1AQ9HD42 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.84■□□□□ 0.77
CHMP1AQ9HD42 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP1AQ9HD42 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP1AQ9HD42 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP1AQ9HD42 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
CHMP1AQ9HD42 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
CHMP1AQ9HD42 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP1AQ9HD42 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP1AQ9HD42 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP1AQ9HD42 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CHMP1AQ9HD42 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.82■□□□□ 0.76
CHMP1AQ9HD42 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms