Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 AC105265.2-201ENST00000467189 838 ntBASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
SLC44A3Q8N4M1 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC24.15■■□□□ 1.46
SLC44A3Q8N4M1 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC24.15■■□□□ 1.46
SLC44A3Q8N4M1 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
SLC44A3Q8N4M1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
SLC44A3Q8N4M1 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC24.14■■□□□ 1.46
SLC44A3Q8N4M1 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
SLC44A3Q8N4M1 LBH-205ENST00000407930 756 ntTSL 2 BASIC24.14■■□□□ 1.45
SLC44A3Q8N4M1 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC24.14■■□□□ 1.45
SLC44A3Q8N4M1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SLC44A3Q8N4M1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC24.14■■□□□ 1.45
SLC44A3Q8N4M1 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
SLC44A3Q8N4M1 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SLC44A3Q8N4M1 GATM-206ENST00000558336 1522 ntTSL 2 BASIC24.13■■□□□ 1.45
SLC44A3Q8N4M1 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
SLC44A3Q8N4M1 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC24.13■■□□□ 1.45
SLC44A3Q8N4M1 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
SLC44A3Q8N4M1 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC24.12■■□□□ 1.45
SLC44A3Q8N4M1 TESK1-206ENST00000620767 2438 ntAPPRIS P1 TSL 5 BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 AF213884.3-201ENST00000563833 479 ntBASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 GRAMD4P4-201ENST00000613563 1115 ntBASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC24.11■■□□□ 1.45
SLC44A3Q8N4M1 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC24.1■■□□□ 1.45
SLC44A3Q8N4M1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SLC44A3Q8N4M1 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SLC44A3Q8N4M1 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC24.1■■□□□ 1.45
SLC44A3Q8N4M1 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC24.1■■□□□ 1.45
SLC44A3Q8N4M1 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC24.1■■□□□ 1.45
SLC44A3Q8N4M1 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SLC44A3Q8N4M1 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SLC44A3Q8N4M1 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC24.09■■□□□ 1.45
SLC44A3Q8N4M1 SHF-208ENST00000560734 1731 ntTSL 3 BASIC24.09■■□□□ 1.45
SLC44A3Q8N4M1 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SLC44A3Q8N4M1 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 MIR939-201ENST00000401314 82 ntBASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.08■■□□□ 1.45
SLC44A3Q8N4M1 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
SLC44A3Q8N4M1 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
SLC44A3Q8N4M1 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 RBM38-205ENST00000440234 686 ntTSL 2 BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 DUX4L19-201ENST00000557448 1267 ntBASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 CIC-201ENST00000160740 6111 ntAPPRIS ALT1 TSL 5 BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
SLC44A3Q8N4M1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SLC44A3Q8N4M1 MIR6821-201ENST00000617625 74 ntBASIC24.06■■□□□ 1.44
SLC44A3Q8N4M1 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC24.06■■□□□ 1.44
SLC44A3Q8N4M1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC24.06■■□□□ 1.44
SLC44A3Q8N4M1 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC24.06■■□□□ 1.44
SLC44A3Q8N4M1 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 PARL-206ENST00000435888 1098 ntTSL 5 BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 STOX2-205ENST00000513034 807 ntTSL 3 BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 ANKRD20A6P-201ENST00000618763 204 ntBASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SLC44A3Q8N4M1 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SLC44A3Q8N4M1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC24.04■■□□□ 1.44
SLC44A3Q8N4M1 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SLC44A3Q8N4M1 AP001330.3-201ENST00000520123 633 ntBASIC24.04■■□□□ 1.44
SLC44A3Q8N4M1 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC24.04■■□□□ 1.44
SLC44A3Q8N4M1 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 SHF-206ENST00000560471 2499 ntTSL 5 BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 AC004448.1-201ENST00000458332 883 ntBASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SLC44A3Q8N4M1 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms