Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 AL139246.5-201ENST00000606645 996 ntBASIC25.26■■□□□ 1.63
VPS52Q8N1B4 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
VPS52Q8N1B4 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
VPS52Q8N1B4 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
VPS52Q8N1B4 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.24■■□□□ 1.63
VPS52Q8N1B4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.23■■□□□ 1.63
VPS52Q8N1B4 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
VPS52Q8N1B4 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 AL356740.2-201ENST00000601559 647 ntBASIC25.22■■□□□ 1.63
VPS52Q8N1B4 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
VPS52Q8N1B4 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC25.21■■□□□ 1.63
VPS52Q8N1B4 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC25.21■■□□□ 1.63
VPS52Q8N1B4 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.63
VPS52Q8N1B4 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 CLTA-210ENST00000540080 989 ntTSL 2 BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
VPS52Q8N1B4 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.19■■□□□ 1.62
VPS52Q8N1B4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS52Q8N1B4 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
VPS52Q8N1B4 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.19■■□□□ 1.62
VPS52Q8N1B4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
VPS52Q8N1B4 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC25.19■■□□□ 1.62
VPS52Q8N1B4 AC145676.1-201ENST00000514988 2004 ntBASIC25.19■■□□□ 1.62
VPS52Q8N1B4 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
VPS52Q8N1B4 AF131216.4-201ENST00000638924 1588 ntBASIC25.18■■□□□ 1.62
VPS52Q8N1B4 FOXO3B-201ENST00000395675 1928 ntBASIC25.18■■□□□ 1.62
VPS52Q8N1B4 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC25.18■■□□□ 1.62
VPS52Q8N1B4 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.18■■□□□ 1.62
VPS52Q8N1B4 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC25.18■■□□□ 1.62
VPS52Q8N1B4 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC25.18■■□□□ 1.62
VPS52Q8N1B4 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
VPS52Q8N1B4 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC25.16■■□□□ 1.62
VPS52Q8N1B4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
VPS52Q8N1B4 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
VPS52Q8N1B4 AK3-203ENST00000447596 705 ntTSL 2 BASIC25.15■■□□□ 1.62
VPS52Q8N1B4 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.15■■□□□ 1.62
VPS52Q8N1B4 MIR4466-201ENST00000606121 54 ntBASIC25.15■■□□□ 1.62
VPS52Q8N1B4 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC25.15■■□□□ 1.62
VPS52Q8N1B4 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
VPS52Q8N1B4 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC25.14■■□□□ 1.62
VPS52Q8N1B4 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC25.14■■□□□ 1.62
VPS52Q8N1B4 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms