Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
USF3Q68DE3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USF3Q68DE3 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
USF3Q68DE3 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
USF3Q68DE3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USF3Q68DE3 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.09■□□□□ 0.81
USF3Q68DE3 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USF3Q68DE3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
USF3Q68DE3 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.08■□□□□ 0.81
USF3Q68DE3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
USF3Q68DE3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
USF3Q68DE3 AL136116.3-201ENST00000402907 1138 ntBASIC20.08■□□□□ 0.8
USF3Q68DE3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
USF3Q68DE3 AC010997.5-201ENST00000609182 354 ntBASIC20.08■□□□□ 0.8
USF3Q68DE3 AL117332.1-201ENST00000622628 974 ntBASIC20.08■□□□□ 0.8
USF3Q68DE3 TP53I3-201ENST00000238721 1998 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
USF3Q68DE3 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.08■□□□□ 0.8
USF3Q68DE3 AL356740.2-201ENST00000601559 647 ntBASIC20.07■□□□□ 0.8
USF3Q68DE3 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
USF3Q68DE3 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC20.07■□□□□ 0.8
USF3Q68DE3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC20.07■□□□□ 0.8
USF3Q68DE3 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USF3Q68DE3 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
USF3Q68DE3 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.07■□□□□ 0.8
USF3Q68DE3 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.07■□□□□ 0.8
USF3Q68DE3 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC20.07■□□□□ 0.8
USF3Q68DE3 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USF3Q68DE3 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
USF3Q68DE3 AC011551.1-201ENST00000614101 683 ntBASIC20.06■□□□□ 0.8
USF3Q68DE3 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
USF3Q68DE3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
USF3Q68DE3 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC20.06■□□□□ 0.8
USF3Q68DE3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC20.06■□□□□ 0.8
USF3Q68DE3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
USF3Q68DE3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC20.05■□□□□ 0.8
USF3Q68DE3 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
USF3Q68DE3 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.05■□□□□ 0.8
USF3Q68DE3 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
USF3Q68DE3 MTDHP2-201ENST00000601468 714 ntBASIC20.05■□□□□ 0.8
USF3Q68DE3 MIR6724-1-201ENST00000616420 92 ntBASIC20.05■□□□□ 0.8
USF3Q68DE3 MIR6724-2-201ENST00000616483 92 ntBASIC20.05■□□□□ 0.8
USF3Q68DE3 MIR6724-4-201ENST00000617390 92 ntBASIC20.05■□□□□ 0.8
USF3Q68DE3 MIR6724-3-201ENST00000622482 92 ntBASIC20.05■□□□□ 0.8
USF3Q68DE3 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC20.05■□□□□ 0.8
USF3Q68DE3 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.04■□□□□ 0.8
USF3Q68DE3 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC20.04■□□□□ 0.8
USF3Q68DE3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.04■□□□□ 0.8
USF3Q68DE3 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC20.04■□□□□ 0.8
USF3Q68DE3 AL139246.5-201ENST00000606645 996 ntBASIC20.04■□□□□ 0.8
USF3Q68DE3 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
USF3Q68DE3 AF131216.4-201ENST00000638924 1588 ntBASIC20.04■□□□□ 0.8
USF3Q68DE3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.04■□□□□ 0.8
USF3Q68DE3 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
USF3Q68DE3 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
USF3Q68DE3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC20.03■□□□□ 0.8
USF3Q68DE3 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC20.03■□□□□ 0.8
USF3Q68DE3 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
USF3Q68DE3 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.02■□□□□ 0.8
USF3Q68DE3 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF3Q68DE3 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF3Q68DE3 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
USF3Q68DE3 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC20.02■□□□□ 0.8
USF3Q68DE3 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USF3Q68DE3 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
USF3Q68DE3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
USF3Q68DE3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.02■□□□□ 0.79
USF3Q68DE3 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
USF3Q68DE3 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USF3Q68DE3 AL512631.2-201ENST00000604634 923 ntBASIC20.01■□□□□ 0.79
USF3Q68DE3 ERN1-208ENST00000606895 2068 ntBASIC20.01■□□□□ 0.79
USF3Q68DE3 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USF3Q68DE3 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
USF3Q68DE3 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
USF3Q68DE3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20■□□□□ 0.79
USF3Q68DE3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20■□□□□ 0.79
USF3Q68DE3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC20■□□□□ 0.79
USF3Q68DE3 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
USF3Q68DE3 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC20■□□□□ 0.79
USF3Q68DE3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
USF3Q68DE3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC20■□□□□ 0.79
USF3Q68DE3 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
USF3Q68DE3 KAT8-206ENST00000543774 1846 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
USF3Q68DE3 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USF3Q68DE3 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USF3Q68DE3 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
USF3Q68DE3 EXOG-217ENST00000630638 197 ntTSL 5 BASIC19.99■□□□□ 0.79
USF3Q68DE3 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
USF3Q68DE3 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC19.99■□□□□ 0.79
USF3Q68DE3 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC19.99■□□□□ 0.79
USF3Q68DE3 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
USF3Q68DE3 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.98■□□□□ 0.79
USF3Q68DE3 AC005837.3-201ENST00000612163 286 ntBASIC19.98■□□□□ 0.79
USF3Q68DE3 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
USF3Q68DE3 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms