Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
CCDC40Q4G0X9 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC40Q4G0X9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC40Q4G0X9 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC40Q4G0X9 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC40Q4G0X9 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
CCDC40Q4G0X9 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC40Q4G0X9 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.58■■□□□ 1.69
CCDC40Q4G0X9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
CCDC40Q4G0X9 AC141586.4-201ENST00000624558 1573 ntBASIC25.58■■□□□ 1.69
CCDC40Q4G0X9 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.58■■□□□ 1.69
CCDC40Q4G0X9 ABHD17AP5-201ENST00000580133 923 ntBASIC25.58■■□□□ 1.69
CCDC40Q4G0X9 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.68
CCDC40Q4G0X9 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC25.57■■□□□ 1.68
CCDC40Q4G0X9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC40Q4G0X9 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC25.57■■□□□ 1.68
CCDC40Q4G0X9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC40Q4G0X9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC25.57■■□□□ 1.68
CCDC40Q4G0X9 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
CCDC40Q4G0X9 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 HLA-L-211ENST00000482052 1765 ntBASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 RABGGTA-202ENST00000399409 2265 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CCDC40Q4G0X9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CCDC40Q4G0X9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC25.54■■□□□ 1.68
CCDC40Q4G0X9 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC40Q4G0X9 LTK-203ENST00000453182 2412 ntTSL 2 BASIC25.54■■□□□ 1.68
CCDC40Q4G0X9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC25.54■■□□□ 1.68
CCDC40Q4G0X9 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC25.54■■□□□ 1.68
CCDC40Q4G0X9 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC25.54■■□□□ 1.68
CCDC40Q4G0X9 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC40Q4G0X9 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC40Q4G0X9 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CCDC40Q4G0X9 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC25.53■■□□□ 1.68
CCDC40Q4G0X9 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC25.53■■□□□ 1.68
CCDC40Q4G0X9 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
CCDC40Q4G0X9 NTF6A-201ENST00000591175 560 ntBASIC25.52■■□□□ 1.68
CCDC40Q4G0X9 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC25.52■■□□□ 1.68
CCDC40Q4G0X9 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC25.52■■□□□ 1.68
CCDC40Q4G0X9 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC25.52■■□□□ 1.68
CCDC40Q4G0X9 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CCDC40Q4G0X9 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 AL592295.1-201ENST00000400984 884 ntBASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CCDC40Q4G0X9 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC40Q4G0X9 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC40Q4G0X9 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC25.49■■□□□ 1.67
CCDC40Q4G0X9 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC25.49■■□□□ 1.67
CCDC40Q4G0X9 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC40Q4G0X9 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CCDC40Q4G0X9 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC25.48■■□□□ 1.67
CCDC40Q4G0X9 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
CCDC40Q4G0X9 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 HYI-210ENST00000486909 905 ntTSL 5 BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 DUX4L18-201ENST00000553347 1267 ntBASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CCDC40Q4G0X9 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
CCDC40Q4G0X9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC25.46■■□□□ 1.67
CCDC40Q4G0X9 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms