Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
PTCHD3Q3KNS1 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.8■■□□□ 1.24
PTCHD3Q3KNS1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 EED-207ENST00000528180 1745 ntTSL 5 BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC22.79■■□□□ 1.24
PTCHD3Q3KNS1 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD3Q3KNS1 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC22.78■■□□□ 1.24
PTCHD3Q3KNS1 LONRF2P2-201ENST00000439212 571 ntBASIC22.78■■□□□ 1.24
PTCHD3Q3KNS1 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD3Q3KNS1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
PTCHD3Q3KNS1 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 PREB-202ENST00000406567 1910 ntTSL 5 BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 AC093323.1-202ENST00000635031 2045 ntBASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
PTCHD3Q3KNS1 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 AC009299.2-201ENST00000482477 511 ntBASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 AC103724.3-201ENST00000564481 992 ntBASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 PKM-204ENST00000449901 2526 ntTSL 2 BASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
PTCHD3Q3KNS1 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 AC019171.1-201ENST00000601251 1056 ntBASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
PTCHD3Q3KNS1 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.74■■□□□ 1.23
PTCHD3Q3KNS1 LINC01124-201ENST00000409786 2117 ntBASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 AL592295.1-201ENST00000400984 884 ntBASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 AL031848.2-201ENST00000607670 837 ntBASIC22.73■■□□□ 1.23
PTCHD3Q3KNS1 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
PTCHD3Q3KNS1 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC22.71■■□□□ 1.23
PTCHD3Q3KNS1 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
PTCHD3Q3KNS1 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
PTCHD3Q3KNS1 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PTCHD3Q3KNS1 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms