Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.98■□□□□ 0.95
LSM3P62310 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.98■□□□□ 0.95
LSM3P62310 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.98■□□□□ 0.95
LSM3P62310 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
LSM3P62310 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.98■□□□□ 0.95
LSM3P62310 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
LSM3P62310 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
LSM3P62310 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LSM3P62310 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
LSM3P62310 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
LSM3P62310 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM3P62310 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
LSM3P62310 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM3P62310 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM3P62310 AC005559.1-201ENST00000589661 871 ntBASIC20.97■□□□□ 0.95
LSM3P62310 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
LSM3P62310 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LSM3P62310 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.97■□□□□ 0.95
LSM3P62310 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
LSM3P62310 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
LSM3P62310 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
LSM3P62310 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.96■□□□□ 0.95
LSM3P62310 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LSM3P62310 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
LSM3P62310 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
LSM3P62310 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.95■□□□□ 0.95
LSM3P62310 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.95■□□□□ 0.94
LSM3P62310 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC20.95■□□□□ 0.94
LSM3P62310 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC20.95■□□□□ 0.94
LSM3P62310 AC136428.2-201ENST00000563187 214 ntBASIC20.95■□□□□ 0.94
LSM3P62310 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
LSM3P62310 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM3P62310 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.94■□□□□ 0.94
LSM3P62310 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM3P62310 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM3P62310 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC20.94■□□□□ 0.94
LSM3P62310 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC20.94■□□□□ 0.94
LSM3P62310 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LSM3P62310 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LSM3P62310 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LSM3P62310 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
LSM3P62310 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM3P62310 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
LSM3P62310 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
LSM3P62310 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.93■□□□□ 0.94
LSM3P62310 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LSM3P62310 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LSM3P62310 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LSM3P62310 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
LSM3P62310 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LSM3P62310 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM3P62310 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
LSM3P62310 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LSM3P62310 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM3P62310 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LSM3P62310 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LSM3P62310 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
LSM3P62310 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LSM3P62310 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LSM3P62310 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
LSM3P62310 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC20.91■□□□□ 0.94
LSM3P62310 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.91■□□□□ 0.94
LSM3P62310 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.9■□□□□ 0.94
LSM3P62310 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LSM3P62310 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LSM3P62310 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.9■□□□□ 0.94
LSM3P62310 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LSM3P62310 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LSM3P62310 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LSM3P62310 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LSM3P62310 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
LSM3P62310 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LSM3P62310 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LSM3P62310 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC20.89■□□□□ 0.93
LSM3P62310 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.89■□□□□ 0.93
LSM3P62310 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LSM3P62310 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM3P62310 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM3P62310 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LSM3P62310 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LSM3P62310 AC097358.2-201ENST00000607541 1159 ntBASIC20.88■□□□□ 0.93
LSM3P62310 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.88■□□□□ 0.93
LSM3P62310 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.88■□□□□ 0.93
LSM3P62310 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM3P62310 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
LSM3P62310 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC20.88■□□□□ 0.93
LSM3P62310 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LSM3P62310 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
LSM3P62310 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
LSM3P62310 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LSM3P62310 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms