Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
CLDN6P56747 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC22.56■■□□□ 1.2
CLDN6P56747 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
CLDN6P56747 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLDN6P56747 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLDN6P56747 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLDN6P56747 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLDN6P56747 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
CLDN6P56747 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
CLDN6P56747 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
CLDN6P56747 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
CLDN6P56747 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC22.54■■□□□ 1.2
CLDN6P56747 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLDN6P56747 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLDN6P56747 SSSCA1-AS1-201ENST00000567594 614 ntBASIC22.54■■□□□ 1.2
CLDN6P56747 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
CLDN6P56747 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
CLDN6P56747 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLDN6P56747 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC22.53■■□□□ 1.2
CLDN6P56747 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.53■■□□□ 1.2
CLDN6P56747 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.53■■□□□ 1.2
CLDN6P56747 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CLDN6P56747 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
CLDN6P56747 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CLDN6P56747 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CLDN6P56747 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
CLDN6P56747 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.52■■□□□ 1.2
CLDN6P56747 AC105265.2-201ENST00000467189 838 ntBASIC22.52■■□□□ 1.2
CLDN6P56747 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC22.52■■□□□ 1.2
CLDN6P56747 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
CLDN6P56747 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.51■■□□□ 1.19
CLDN6P56747 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CLDN6P56747 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
CLDN6P56747 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
CLDN6P56747 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CLDN6P56747 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
CLDN6P56747 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN6P56747 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CLDN6P56747 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN6P56747 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC22.5■■□□□ 1.19
CLDN6P56747 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN6P56747 STOX2-205ENST00000513034 807 ntTSL 3 BASIC22.5■■□□□ 1.19
CLDN6P56747 AC104564.3-201ENST00000582367 638 ntBASIC22.5■■□□□ 1.19
CLDN6P56747 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CLDN6P56747 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC22.5■■□□□ 1.19
CLDN6P56747 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC22.5■■□□□ 1.19
CLDN6P56747 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
CLDN6P56747 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN6P56747 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN6P56747 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN6P56747 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC22.49■■□□□ 1.19
CLDN6P56747 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN6P56747 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
CLDN6P56747 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC22.49■■□□□ 1.19
CLDN6P56747 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
CLDN6P56747 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 SRD5A1P1-201ENST00000442297 786 ntBASIC22.48■■□□□ 1.19
CLDN6P56747 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.48■■□□□ 1.19
CLDN6P56747 MIR5787-201ENST00000611784 55 ntBASIC22.48■■□□□ 1.19
CLDN6P56747 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC22.48■■□□□ 1.19
CLDN6P56747 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC22.48■■□□□ 1.19
CLDN6P56747 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
CLDN6P56747 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN6P56747 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC22.47■■□□□ 1.19
CLDN6P56747 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.47■■□□□ 1.19
CLDN6P56747 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC22.47■■□□□ 1.19
CLDN6P56747 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.47■■□□□ 1.19
CLDN6P56747 AF213884.3-201ENST00000563833 479 ntBASIC22.47■■□□□ 1.19
CLDN6P56747 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN6P56747 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLDN6P56747 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN6P56747 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN6P56747 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC22.46■■□□□ 1.19
CLDN6P56747 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC22.46■■□□□ 1.19
CLDN6P56747 MIR6722-201ENST00000617286 78 ntBASIC22.46■■□□□ 1.19
CLDN6P56747 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC22.46■■□□□ 1.19
CLDN6P56747 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.46■■□□□ 1.19
CLDN6P56747 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.45■■□□□ 1.18
CLDN6P56747 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN6P56747 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.45■■□□□ 1.18
CLDN6P56747 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.45■■□□□ 1.18
CLDN6P56747 AL355001.2-201ENST00000620617 1191 ntBASIC22.45■■□□□ 1.18
CLDN6P56747 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN6P56747 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC22.45■■□□□ 1.18
CLDN6P56747 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC22.45■■□□□ 1.18
CLDN6P56747 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLDN6P56747 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC22.44■■□□□ 1.18
CLDN6P56747 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC22.44■■□□□ 1.18
CLDN6P56747 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.44■■□□□ 1.18
CLDN6P56747 AC090877.2-201ENST00000558441 1738 ntBASIC22.44■■□□□ 1.18
CLDN6P56747 AL136967.2-201ENST00000623968 743 ntBASIC22.44■■□□□ 1.18
CLDN6P56747 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC22.43■■□□□ 1.18
CLDN6P56747 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC22.43■■□□□ 1.18
CLDN6P56747 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.43■■□□□ 1.18
CLDN6P56747 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.43■■□□□ 1.18
Retrieved 100 of 98,524 protein–RNA pairs in 15 ms