Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC29.76■■■□□ 2.35
RFC4P35249 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC29.76■■■□□ 2.35
RFC4P35249 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC29.76■■■□□ 2.35
RFC4P35249 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
RFC4P35249 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
RFC4P35249 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
RFC4P35249 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC29.76■■■□□ 2.35
RFC4P35249 GATM-206ENST00000558336 1522 ntTSL 2 BASIC29.76■■■□□ 2.35
RFC4P35249 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.75■■■□□ 2.35
RFC4P35249 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RFC4P35249 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RFC4P35249 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RFC4P35249 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
RFC4P35249 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
RFC4P35249 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC29.74■■■□□ 2.35
RFC4P35249 GRAMD4P4-201ENST00000613563 1115 ntBASIC29.74■■■□□ 2.35
RFC4P35249 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
RFC4P35249 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
RFC4P35249 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC29.73■■■□□ 2.35
RFC4P35249 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
RFC4P35249 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC29.73■■■□□ 2.35
RFC4P35249 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC29.73■■■□□ 2.35
RFC4P35249 AF213884.3-201ENST00000563833 479 ntBASIC29.73■■■□□ 2.35
RFC4P35249 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC29.73■■■□□ 2.35
RFC4P35249 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC29.73■■■□□ 2.35
RFC4P35249 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC29.73■■■□□ 2.35
RFC4P35249 SHF-208ENST00000560734 1731 ntTSL 3 BASIC29.73■■■□□ 2.35
RFC4P35249 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RFC4P35249 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RFC4P35249 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RFC4P35249 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RFC4P35249 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC29.72■■■□□ 2.35
RFC4P35249 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.35
RFC4P35249 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC29.71■■■□□ 2.35
RFC4P35249 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RFC4P35249 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RFC4P35249 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC29.71■■■□□ 2.35
RFC4P35249 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC29.71■■■□□ 2.35
RFC4P35249 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
RFC4P35249 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
RFC4P35249 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC29.7■■■□□ 2.35
RFC4P35249 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC29.7■■■□□ 2.35
RFC4P35249 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
RFC4P35249 MIR939-201ENST00000401314 82 ntBASIC29.69■■■□□ 2.34
RFC4P35249 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.69■■■□□ 2.34
RFC4P35249 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC29.69■■■□□ 2.34
RFC4P35249 DUX4L19-201ENST00000557448 1267 ntBASIC29.68■■■□□ 2.34
RFC4P35249 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC29.68■■■□□ 2.34
RFC4P35249 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC29.67■■■□□ 2.34
RFC4P35249 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC29.67■■■□□ 2.34
RFC4P35249 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.67■■■□□ 2.34
RFC4P35249 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC29.67■■■□□ 2.34
RFC4P35249 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC29.67■■■□□ 2.34
RFC4P35249 RBM38-205ENST00000440234 686 ntTSL 2 BASIC29.67■■■□□ 2.34
RFC4P35249 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC29.67■■■□□ 2.34
RFC4P35249 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC29.67■■■□□ 2.34
RFC4P35249 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC29.67■■■□□ 2.34
RFC4P35249 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
RFC4P35249 PARL-206ENST00000435888 1098 ntTSL 5 BASIC29.66■■■□□ 2.34
RFC4P35249 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
RFC4P35249 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC29.66■■■□□ 2.34
RFC4P35249 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC29.66■■■□□ 2.34
RFC4P35249 ANKRD20A6P-201ENST00000618763 204 ntBASIC29.66■■■□□ 2.34
RFC4P35249 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
RFC4P35249 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC29.65■■■□□ 2.34
RFC4P35249 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC29.65■■■□□ 2.34
RFC4P35249 AP001330.3-201ENST00000520123 633 ntBASIC29.65■■■□□ 2.34
RFC4P35249 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
RFC4P35249 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC29.65■■■□□ 2.34
RFC4P35249 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC29.64■■■□□ 2.34
RFC4P35249 STOX2-205ENST00000513034 807 ntTSL 3 BASIC29.64■■■□□ 2.34
RFC4P35249 MIR6821-201ENST00000617625 74 ntBASIC29.64■■■□□ 2.34
RFC4P35249 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC29.63■■■□□ 2.33
RFC4P35249 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC29.63■■■□□ 2.33
RFC4P35249 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
RFC4P35249 AC004448.1-201ENST00000458332 883 ntBASIC29.63■■■□□ 2.33
RFC4P35249 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC29.63■■■□□ 2.33
RFC4P35249 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC29.63■■■□□ 2.33
RFC4P35249 SF1-220ENST00000626028 704 ntTSL 2 BASIC29.63■■■□□ 2.33
RFC4P35249 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
RFC4P35249 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
RFC4P35249 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC29.63■■■□□ 2.33
RFC4P35249 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
RFC4P35249 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC29.62■■■□□ 2.33
RFC4P35249 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC29.62■■■□□ 2.33
RFC4P35249 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
RFC4P35249 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC29.62■■■□□ 2.33
RFC4P35249 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC29.62■■■□□ 2.33
RFC4P35249 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC29.62■■■□□ 2.33
RFC4P35249 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
RFC4P35249 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC29.61■■■□□ 2.33
RFC4P35249 AC091305.1-201ENST00000479476 895 ntBASIC29.61■■■□□ 2.33
RFC4P35249 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC29.61■■■□□ 2.33
RFC4P35249 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
RFC4P35249 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC29.61■■■□□ 2.33
RFC4P35249 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC29.61■■■□□ 2.33
RFC4P35249 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC29.61■■■□□ 2.33
RFC4P35249 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC29.6■■■□□ 2.33
RFC4P35249 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.6■■■□□ 2.33
RFC4P35249 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC29.6■■■□□ 2.33
Retrieved 100 of 98,524 protein–RNA pairs in 11.9 ms