Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
FREM3P0C091 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
FREM3P0C091 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
FREM3P0C091 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
FREM3P0C091 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC21.27■■□□□ 1
FREM3P0C091 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
FREM3P0C091 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
FREM3P0C091 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
FREM3P0C091 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FREM3P0C091 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
FREM3P0C091 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC21.26■□□□□ 0.99
FREM3P0C091 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FREM3P0C091 SLC6A10P-202ENST00000431994 2058 ntBASIC21.26■□□□□ 0.99
FREM3P0C091 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FREM3P0C091 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FREM3P0C091 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.25■□□□□ 0.99
FREM3P0C091 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.25■□□□□ 0.99
FREM3P0C091 AC022211.4-201ENST00000625094 2161 ntBASIC21.25■□□□□ 0.99
FREM3P0C091 AF131216.4-201ENST00000638924 1588 ntBASIC21.25■□□□□ 0.99
FREM3P0C091 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
FREM3P0C091 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FREM3P0C091 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.25■□□□□ 0.99
FREM3P0C091 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.25■□□□□ 0.99
FREM3P0C091 GRAMD4P7-201ENST00000578182 1232 ntBASIC21.25■□□□□ 0.99
FREM3P0C091 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FREM3P0C091 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC21.24■□□□□ 0.99
FREM3P0C091 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC21.24■□□□□ 0.99
FREM3P0C091 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
FREM3P0C091 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FREM3P0C091 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FREM3P0C091 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.23■□□□□ 0.99
FREM3P0C091 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.23■□□□□ 0.99
FREM3P0C091 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FREM3P0C091 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FREM3P0C091 KRT16P3-201ENST00000439127 1283 ntBASIC21.23■□□□□ 0.99
FREM3P0C091 UNC93B8-201ENST00000511903 705 ntBASIC21.23■□□□□ 0.99
FREM3P0C091 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FREM3P0C091 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FREM3P0C091 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC21.23■□□□□ 0.99
FREM3P0C091 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FREM3P0C091 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
FREM3P0C091 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FREM3P0C091 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.22■□□□□ 0.99
FREM3P0C091 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FREM3P0C091 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FREM3P0C091 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.22■□□□□ 0.99
FREM3P0C091 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.22■□□□□ 0.99
FREM3P0C091 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
FREM3P0C091 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FREM3P0C091 PORCN-203ENST00000359882 1877 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
FREM3P0C091 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
FREM3P0C091 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.21■□□□□ 0.99
FREM3P0C091 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
FREM3P0C091 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
FREM3P0C091 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC21.21■□□□□ 0.99
FREM3P0C091 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FREM3P0C091 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
FREM3P0C091 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.2■□□□□ 0.98
FREM3P0C091 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FREM3P0C091 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FREM3P0C091 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
FREM3P0C091 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC21.19■□□□□ 0.98
FREM3P0C091 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FREM3P0C091 AC021242.3-201ENST00000607598 1377 ntBASIC21.19■□□□□ 0.98
FREM3P0C091 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC21.19■□□□□ 0.98
FREM3P0C091 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.19■□□□□ 0.98
FREM3P0C091 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
FREM3P0C091 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.18■□□□□ 0.98
FREM3P0C091 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FREM3P0C091 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FREM3P0C091 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.18■□□□□ 0.98
FREM3P0C091 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.18■□□□□ 0.98
FREM3P0C091 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.18■□□□□ 0.98
FREM3P0C091 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.18■□□□□ 0.98
FREM3P0C091 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
FREM3P0C091 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC21.18■□□□□ 0.98
FREM3P0C091 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
FREM3P0C091 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
FREM3P0C091 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.17■□□□□ 0.98
FREM3P0C091 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC21.17■□□□□ 0.98
FREM3P0C091 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
FREM3P0C091 AC092028.1-203ENST00000608262 953 ntBASIC21.17■□□□□ 0.98
FREM3P0C091 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
FREM3P0C091 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
FREM3P0C091 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
FREM3P0C091 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.17■□□□□ 0.98
FREM3P0C091 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.17■□□□□ 0.98
FREM3P0C091 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
FREM3P0C091 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FREM3P0C091 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
FREM3P0C091 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
FREM3P0C091 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.16■□□□□ 0.98
FREM3P0C091 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
FREM3P0C091 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 976.4 ms