Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC35.72■■■■□ 3.31
RAPGEF3O95398 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC35.72■■■■□ 3.31
RAPGEF3O95398 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC35.72■■■■□ 3.31
RAPGEF3O95398 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC35.72■■■■□ 3.31
RAPGEF3O95398 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC35.71■■■■□ 3.31
RAPGEF3O95398 AC022517.1-201ENST00000592429 346 ntBASIC35.71■■■■□ 3.31
RAPGEF3O95398 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC35.71■■■■□ 3.31
RAPGEF3O95398 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC35.71■■■■□ 3.31
RAPGEF3O95398 LINC01003-201ENST00000564834 1764 ntBASIC35.71■■■■□ 3.31
RAPGEF3O95398 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC35.71■■■■□ 3.31
RAPGEF3O95398 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC35.7■■■■□ 3.31
RAPGEF3O95398 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC35.7■■■■□ 3.31
RAPGEF3O95398 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC35.7■■■■□ 3.31
RAPGEF3O95398 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC35.69■■■■□ 3.3
RAPGEF3O95398 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC35.69■■■■□ 3.3
RAPGEF3O95398 SERBP1P1-201ENST00000396021 1160 ntBASIC35.69■■■■□ 3.3
RAPGEF3O95398 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC35.69■■■■□ 3.3
RAPGEF3O95398 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC35.69■■■■□ 3.3
RAPGEF3O95398 RHOF-204ENST00000537265 699 ntTSL 2 BASIC35.69■■■■□ 3.3
RAPGEF3O95398 AC027682.1-201ENST00000562846 899 ntBASIC35.69■■■■□ 3.3
RAPGEF3O95398 FOXO3B-201ENST00000395675 1928 ntBASIC35.69■■■■□ 3.3
RAPGEF3O95398 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC35.68■■■■□ 3.3
RAPGEF3O95398 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC35.68■■■■□ 3.3
RAPGEF3O95398 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC35.68■■■■□ 3.3
RAPGEF3O95398 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC35.68■■■■□ 3.3
RAPGEF3O95398 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC35.68■■■■□ 3.3
RAPGEF3O95398 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
RAPGEF3O95398 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC35.67■■■■□ 3.3
RAPGEF3O95398 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC35.67■■■■□ 3.3
RAPGEF3O95398 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC35.67■■■■□ 3.3
RAPGEF3O95398 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC35.67■■■■□ 3.3
RAPGEF3O95398 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC35.67■■■■□ 3.3
RAPGEF3O95398 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC35.67■■■■□ 3.3
RAPGEF3O95398 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
RAPGEF3O95398 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC35.66■■■■□ 3.3
RAPGEF3O95398 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC35.66■■■■□ 3.3
RAPGEF3O95398 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC35.66■■■■□ 3.3
RAPGEF3O95398 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC35.66■■■■□ 3.3
RAPGEF3O95398 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC35.66■■■■□ 3.3
RAPGEF3O95398 AC092437.1-201ENST00000624794 1048 ntBASIC35.66■■■■□ 3.3
RAPGEF3O95398 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC35.66■■■■□ 3.3
RAPGEF3O95398 AC008764.7-201ENST00000593779 1081 ntBASIC35.65■■■■□ 3.3
RAPGEF3O95398 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
RAPGEF3O95398 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC35.64■■■■□ 3.3
RAPGEF3O95398 SP2-202ENST00000613139 908 ntTSL 5 BASIC35.64■■■■□ 3.3
RAPGEF3O95398 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC35.64■■■■□ 3.3
RAPGEF3O95398 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
RAPGEF3O95398 LBH-205ENST00000407930 756 ntTSL 2 BASIC35.63■■■■□ 3.29
RAPGEF3O95398 ASB1-202ENST00000409297 878 ntTSL 5 BASIC35.63■■■■□ 3.29
RAPGEF3O95398 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
RAPGEF3O95398 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC35.63■■■■□ 3.29
RAPGEF3O95398 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC35.63■■■■□ 3.29
RAPGEF3O95398 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
RAPGEF3O95398 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
RAPGEF3O95398 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
RAPGEF3O95398 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC35.62■■■■□ 3.29
RAPGEF3O95398 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC35.62■■■■□ 3.29
RAPGEF3O95398 AL137784.2-201ENST00000607332 1000 ntBASIC35.62■■■■□ 3.29
RAPGEF3O95398 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC35.62■■■■□ 3.29
RAPGEF3O95398 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC35.62■■■■□ 3.29
RAPGEF3O95398 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC35.61■■■■□ 3.29
RAPGEF3O95398 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC35.61■■■■□ 3.29
RAPGEF3O95398 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
RAPGEF3O95398 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
RAPGEF3O95398 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC35.61■■■■□ 3.29
RAPGEF3O95398 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC35.61■■■■□ 3.29
RAPGEF3O95398 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC35.61■■■■□ 3.29
RAPGEF3O95398 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC35.6■■■■□ 3.29
RAPGEF3O95398 HACD1-201ENST00000326961 773 ntTSL 2 BASIC35.6■■■■□ 3.29
RAPGEF3O95398 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC35.6■■■■□ 3.29
RAPGEF3O95398 AC099791.1-201ENST00000416440 715 ntBASIC35.6■■■■□ 3.29
RAPGEF3O95398 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC35.6■■■■□ 3.29
RAPGEF3O95398 DENND3-207ENST00000518347 850 ntTSL 2 BASIC35.6■■■■□ 3.29
RAPGEF3O95398 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC35.6■■■■□ 3.29
RAPGEF3O95398 AP004609.3-201ENST00000610705 1884 ntBASIC35.6■■■■□ 3.29
RAPGEF3O95398 AC090877.2-201ENST00000558441 1738 ntBASIC35.6■■■■□ 3.29
RAPGEF3O95398 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
RAPGEF3O95398 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC35.59■■■■□ 3.29
RAPGEF3O95398 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC35.59■■■■□ 3.29
RAPGEF3O95398 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC35.59■■■■□ 3.29
RAPGEF3O95398 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC35.58■■■■□ 3.29
RAPGEF3O95398 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC35.58■■■■□ 3.29
RAPGEF3O95398 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC35.58■■■■□ 3.29
RAPGEF3O95398 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC35.57■■■■□ 3.28
RAPGEF3O95398 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC35.57■■■■□ 3.28
RAPGEF3O95398 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC35.57■■■■□ 3.28
RAPGEF3O95398 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC35.57■■■■□ 3.28
RAPGEF3O95398 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC35.56■■■■□ 3.28
RAPGEF3O95398 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC35.56■■■■□ 3.28
RAPGEF3O95398 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC35.56■■■■□ 3.28
RAPGEF3O95398 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC35.56■■■■□ 3.28
RAPGEF3O95398 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC35.56■■■■□ 3.28
RAPGEF3O95398 KRT18P5-201ENST00000436075 1291 ntBASIC35.55■■■■□ 3.28
RAPGEF3O95398 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC35.55■■■■□ 3.28
RAPGEF3O95398 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC35.55■■■■□ 3.28
RAPGEF3O95398 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC35.55■■■■□ 3.28
RAPGEF3O95398 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC35.54■■■■□ 3.28
RAPGEF3O95398 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC35.54■■■■□ 3.28
RAPGEF3O95398 PTCHD3P2-201ENST00000424937 1205 ntBASIC35.54■■■■□ 3.28
RAPGEF3O95398 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC35.54■■■■□ 3.28
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms