Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC38.79■■■■□ 3.8
CHD1O14646 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC38.78■■■■□ 3.8
CHD1O14646 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC38.78■■■■□ 3.8
CHD1O14646 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
CHD1O14646 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC38.78■■■■□ 3.8
CHD1O14646 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC38.78■■■■□ 3.8
CHD1O14646 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC38.78■■■■□ 3.8
CHD1O14646 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC38.77■■■■□ 3.8
CHD1O14646 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC38.77■■■■□ 3.8
CHD1O14646 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC38.76■■■■□ 3.8
CHD1O14646 AC011298.3-201ENST00000615796 283 ntBASIC38.76■■■■□ 3.8
CHD1O14646 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC38.76■■■■□ 3.8
CHD1O14646 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC38.75■■■■□ 3.79
CHD1O14646 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC38.75■■■■□ 3.79
CHD1O14646 SYT6-210ENST00000641643 1587 ntBASIC38.75■■■■□ 3.79
CHD1O14646 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC38.75■■■■□ 3.79
CHD1O14646 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC38.75■■■■□ 3.79
CHD1O14646 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC38.74■■■■□ 3.79
CHD1O14646 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC38.74■■■■□ 3.79
CHD1O14646 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC38.74■■■■□ 3.79
CHD1O14646 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC38.74■■■■□ 3.79
CHD1O14646 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC38.74■■■■□ 3.79
CHD1O14646 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC38.73■■■■□ 3.79
CHD1O14646 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L2-201ENST00000561772 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L6-201ENST00000626483 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L1-201ENST00000627662 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L8-201ENST00000629013 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L3-201ENST00000630187 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L7-201ENST00000630678 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 DUX4L5-201ENST00000630834 1275 ntBASIC38.73■■■■□ 3.79
CHD1O14646 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC38.73■■■■□ 3.79
CHD1O14646 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC38.72■■■■□ 3.79
CHD1O14646 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
CHD1O14646 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
CHD1O14646 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC38.72■■■■□ 3.79
CHD1O14646 AC008764.7-201ENST00000593779 1081 ntBASIC38.72■■■■□ 3.79
CHD1O14646 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC38.72■■■■□ 3.79
CHD1O14646 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC38.72■■■■□ 3.79
CHD1O14646 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC38.72■■■■□ 3.79
CHD1O14646 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC38.72■■■■□ 3.79
CHD1O14646 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
CHD1O14646 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC38.72■■■■□ 3.79
CHD1O14646 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC38.72■■■■□ 3.79
CHD1O14646 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC38.71■■■■□ 3.79
CHD1O14646 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC38.71■■■■□ 3.79
CHD1O14646 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC38.7■■■■□ 3.79
CHD1O14646 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC38.7■■■■□ 3.79
CHD1O14646 AC142472.1-201ENST00000612013 1741 ntBASIC38.7■■■■□ 3.79
CHD1O14646 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC38.69■■■■□ 3.78
CHD1O14646 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC38.69■■■■□ 3.78
CHD1O14646 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC38.69■■■■□ 3.78
CHD1O14646 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC38.69■■■■□ 3.78
CHD1O14646 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC38.69■■■■□ 3.78
CHD1O14646 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC38.68■■■■□ 3.78
CHD1O14646 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC38.68■■■■□ 3.78
CHD1O14646 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC38.68■■■■□ 3.78
CHD1O14646 DLX3-202ENST00000512495 834 ntTSL 2 BASIC38.67■■■■□ 3.78
CHD1O14646 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC38.67■■■■□ 3.78
CHD1O14646 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC38.66■■■■□ 3.78
CHD1O14646 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC38.66■■■■□ 3.78
CHD1O14646 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC38.66■■■■□ 3.78
CHD1O14646 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC38.66■■■■□ 3.78
CHD1O14646 AC004911.1-201ENST00000416316 871 ntBASIC38.66■■■■□ 3.78
CHD1O14646 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC38.65■■■■□ 3.78
CHD1O14646 AK1-201ENST00000223836 736 ntTSL 3 BASIC38.64■■■■□ 3.78
CHD1O14646 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC38.64■■■■□ 3.78
CHD1O14646 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC38.64■■■■□ 3.78
CHD1O14646 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC38.64■■■■□ 3.78
CHD1O14646 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC38.64■■■■□ 3.78
CHD1O14646 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC38.64■■■■□ 3.78
CHD1O14646 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC38.63■■■■□ 3.78
CHD1O14646 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC38.63■■■■□ 3.78
CHD1O14646 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC38.63■■■■□ 3.78
CHD1O14646 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC38.63■■■■□ 3.78
CHD1O14646 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC38.63■■■■□ 3.78
CHD1O14646 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC38.63■■■■□ 3.77
CHD1O14646 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC38.63■■■■□ 3.77
CHD1O14646 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
CHD1O14646 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
CHD1O14646 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC38.62■■■■□ 3.77
CHD1O14646 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC38.62■■■■□ 3.77
CHD1O14646 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC38.61■■■■□ 3.77
CHD1O14646 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC38.61■■■■□ 3.77
CHD1O14646 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC38.61■■■■□ 3.77
CHD1O14646 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC38.6■■■■□ 3.77
CHD1O14646 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC38.6■■■■□ 3.77
CHD1O14646 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC38.6■■■■□ 3.77
CHD1O14646 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC38.6■■■■□ 3.77
CHD1O14646 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC38.59■■■■□ 3.77
CHD1O14646 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC38.59■■■■□ 3.77
CHD1O14646 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC38.59■■■■□ 3.77
CHD1O14646 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC38.59■■■■□ 3.77
CHD1O14646 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC38.59■■■■□ 3.77
CHD1O14646 HLA-L-209ENST00000420110 1011 ntBASIC38.58■■■■□ 3.77
CHD1O14646 VPS53-216ENST00000574029 585 ntTSL 4 BASIC38.58■■■■□ 3.77
CHD1O14646 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC38.58■■■■□ 3.77
CHD1O14646 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC38.58■■■■□ 3.77
CHD1O14646 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC38.58■■■■□ 3.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms