Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 CD81-202ENST00000381036 880 ntTSL 3 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AC004461.1-201ENST00000412461 403 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AL627223.1-201ENST00000416693 442 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AL645939.2-201ENST00000427340 991 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 FAM58DP-201ENST00000428076 619 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 SUOX-214ENST00000551841 906 ntTSL 3 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 BANF1P1-201ENST00000553684 263 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 MIR4469-201ENST00000583919 79 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AC018529.1-201ENST00000613063 361 ntBASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
HIF3AQ9Y2N7 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 C18orf15-201ENST00000623680 2534 ntBASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 ZNF385C-205ENST00000618554 2596 ntTSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 FXR1-221ENST00000491674 365 ntTSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 AP000344.2-201ENST00000512987 629 ntBASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 AC093520.2-201ENST00000561830 333 ntBASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 AC105021.1-202ENST00000570572 669 ntBASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
HIF3AQ9Y2N7 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 STK33-217ENST00000534493 1895 ntTSL 2 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
HIF3AQ9Y2N7 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms