Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 PON3-203ENST00000427422 894 ntTSL 3 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 CICP11-201ENST00000434745 2827 ntBASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 AC024230.1-201ENST00000511431 889 ntTSL 3 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 GOLGA6L17P-202ENST00000614358 1398 ntBASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HERPUD2Q9BSE4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 SLC25A38-201ENST00000273158 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 TSEN15P1-201ENST00000423257 515 ntBASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 AL353705.2-201ENST00000428243 662 ntBASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 TARDBPP1-201ENST00000442013 1203 ntBASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 RN7SL828P-201ENST00000607615 303 ntBASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 AC003101.2-201ENST00000612557 442 ntBASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 KCNG4-202ENST00000568181 2199 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
HERPUD2Q9BSE4 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HERPUD2Q9BSE4 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms