Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 CDC45-202ENST00000404724 1693 ntTSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 MRPL49-209ENST00000534078 518 ntTSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 AC009779.1-201ENST00000551138 283 ntBASIC16.28■□□□□ 0.2
CHD9Q3L8U1 MIR4649-201ENST00000582839 64 ntBASIC16.28■□□□□ 0.2
CHD9Q3L8U1 OR10B1P-201ENST00000601666 907 ntBASIC16.28■□□□□ 0.2
CHD9Q3L8U1 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CHD9Q3L8U1 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 RPS9P1-201ENST00000419943 583 ntBASIC16.27■□□□□ 0.2
CHD9Q3L8U1 REC114-202ENST00000560581 833 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 NAT9-211ENST00000580632 799 ntTSL 3 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
CHD9Q3L8U1 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 AC097065.1-201ENST00000425737 517 ntBASIC16.27■□□□□ 0.19
CHD9Q3L8U1 EEF1D-218ENST00000526838 926 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 SEC23A-204ENST00000548032 907 ntTSL 2 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.19
CHD9Q3L8U1 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 LINC01006-202ENST00000418309 640 ntTSL 3 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 TEX33-202ENST00000402860 986 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 AGGF1P2-201ENST00000426656 2106 ntBASIC16.26■□□□□ 0.19
CHD9Q3L8U1 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CHD9Q3L8U1 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 IDS-203ENST00000428056 1213 ntTSL 2 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 NDUFC2-204ENST00000528164 561 ntTSL 2 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 MIR4313-201ENST00000580760 101 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 RN7SL596P-201ENST00000582123 288 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 AC105137.3-201ENST00000617588 984 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 TBC1D3J-201ENST00000620719 1426 ntBASIC16.25■□□□□ 0.19
CHD9Q3L8U1 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CHD9Q3L8U1 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 74.1 ms