Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 FADS2-215ENST00000574708 385 ntTSL 3 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.2■□□□□ 0.02
COL28A1Q2UY09 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 AC007950.2-201ENST00000615045 2347 ntBASIC15.2■□□□□ 0.02
COL28A1Q2UY09 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 ACE-204ENST00000428043 5120 ntTSL 2 BASIC15.2■□□□□ 0.02
COL28A1Q2UY09 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 BTBD6P1-201ENST00000412176 1267 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 NUS1P3-201ENST00000423502 862 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AP001889.1-201ENST00000525414 633 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 TDH-203ENST00000531764 1110 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AL583722.2-201ENST00000557223 663 ntTSL 3 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 TUBB8-202ENST00000562809 820 ntTSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 MIR4706-201ENST00000582134 82 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AL031731.1-201ENST00000642131 2094 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
COL28A1Q2UY09 AC073439.1-201ENST00000624121 1774 ntBASIC15.19■□□□□ 0.02
COL28A1Q2UY09 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.18■□□□□ 0.02
COL28A1Q2UY09 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 GZMB-202ENST00000382540 816 ntTSL 5 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.18■□□□□ 0.02
COL28A1Q2UY09 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms