Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC9.46□□□□□ -0.9
HSPG2P98160 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC9.46□□□□□ -0.9
HSPG2P98160 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC9.46□□□□□ -0.9
HSPG2P98160 AL132639.2-202ENST00000553520 467 ntTSL 2 BASIC9.46□□□□□ -0.9
HSPG2P98160 AC011825.3-201ENST00000583184 565 ntTSL 5 BASIC9.46□□□□□ -0.9
HSPG2P98160 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC9.46□□□□□ -0.9
HSPG2P98160 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC9.46□□□□□ -0.9
HSPG2P98160 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC9.46□□□□□ -0.9
HSPG2P98160 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC9.46□□□□□ -0.9
HSPG2P98160 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC9.46□□□□□ -0.9
HSPG2P98160 GCSHP3-201ENST00000431120 391 ntBASIC9.46□□□□□ -0.9
HSPG2P98160 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC9.46□□□□□ -0.9
HSPG2P98160 PMEL-214ENST00000550447 901 ntTSL 3 BASIC9.46□□□□□ -0.9
HSPG2P98160 TMIGD2-204ENST00000600349 333 ntAPPRIS ALT2 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 PEBP1P2-201ENST00000603980 558 ntBASIC9.46□□□□□ -0.9
HSPG2P98160 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC9.46□□□□□ -0.9
HSPG2P98160 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC9.46□□□□□ -0.9
HSPG2P98160 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC9.46□□□□□ -0.9
HSPG2P98160 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC9.45□□□□□ -0.9
HSPG2P98160 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC9.45□□□□□ -0.9
HSPG2P98160 AC009560.1-201ENST00000620208 434 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 AC018470.1-201ENST00000624790 3129 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 KRT17P4-201ENST00000429445 819 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 AL627422.1-201ENST00000434104 580 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 AC026320.2-201ENST00000434379 478 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
HSPG2P98160 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC9.45□□□□□ -0.9
HSPG2P98160 CNN1-201ENST00000252456 1633 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 ASB10-204ENST00000420175 1694 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 AL132801.1-201ENST00000559675 567 ntTSL 4 BASIC9.45□□□□□ -0.9
HSPG2P98160 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 GATB-213ENST00000515812 1893 ntTSL 5 BASIC9.45□□□□□ -0.9
HSPG2P98160 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC9.45□□□□□ -0.9
HSPG2P98160 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HSPG2P98160 RN7SKP175-201ENST00000408472 289 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 OST4-201ENST00000429985 559 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC9.45□□□□□ -0.9
HSPG2P98160 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC9.45□□□□□ -0.9
HSPG2P98160 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC9.45□□□□□ -0.9
HSPG2P98160 AL109837.1-201ENST00000603272 613 ntBASIC9.45□□□□□ -0.9
HSPG2P98160 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 FAM90A7P-201ENST00000382628 1395 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 FAM90A23P-201ENST00000400136 1395 ntBASIC9.44□□□□□ -0.9
HSPG2P98160 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 EMP1-211ENST00000544053 1436 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 XKRX-202ENST00000468904 2249 ntTSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 AMT-224ENST00000635808 1610 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC9.44□□□□□ -0.9
HSPG2P98160 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC9.44□□□□□ -0.9
HSPG2P98160 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HSPG2P98160 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC9.44□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms