Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
H3F3AP84243 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
H3F3AP84243 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
H3F3AP84243 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.1□□□□□ -0.15
H3F3AP84243 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.1□□□□□ -0.15
H3F3AP84243 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.1□□□□□ -0.15
H3F3AP84243 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.1□□□□□ -0.15
H3F3AP84243 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.1□□□□□ -0.15
H3F3AP84243 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.1□□□□□ -0.15
H3F3AP84243 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 LINC01115-203ENST00000606068 577 ntBASIC14.1□□□□□ -0.15
H3F3AP84243 AL355385.1-201ENST00000606123 409 ntBASIC14.1□□□□□ -0.15
H3F3AP84243 AC004461.2-201ENST00000629517 803 ntBASIC14.1□□□□□ -0.15
H3F3AP84243 AC004840.1-201ENST00000636359 365 ntBASIC14.1□□□□□ -0.15
H3F3AP84243 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 AC092127.1-201ENST00000567093 3455 ntBASIC14.1□□□□□ -0.15
H3F3AP84243 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC14.1□□□□□ -0.15
H3F3AP84243 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.1□□□□□ -0.15
H3F3AP84243 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
H3F3AP84243 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
H3F3AP84243 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 SYS1-203ENST00000414310 795 ntTSL 3 BASIC14.09□□□□□ -0.15
H3F3AP84243 AC015922.1-201ENST00000421102 1152 ntBASIC14.09□□□□□ -0.15
H3F3AP84243 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC14.09□□□□□ -0.15
H3F3AP84243 INGX-202ENST00000489074 768 ntBASIC14.09□□□□□ -0.15
H3F3AP84243 SLED1-202ENST00000512051 380 ntBASIC14.09□□□□□ -0.15
H3F3AP84243 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.09□□□□□ -0.15
H3F3AP84243 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.09□□□□□ -0.15
H3F3AP84243 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.09□□□□□ -0.15
H3F3AP84243 NAA60-208ENST00000570819 833 ntTSL 2 BASIC14.09□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms