Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT3P12035 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 FO538757.1-201ENST00000623083 1397 ntBASIC16.64■□□□□ 0.25
KRT3P12035 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
KRT3P12035 AMT-233ENST00000636522 1620 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
KRT3P12035 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 KLF2P3-201ENST00000451977 1087 ntBASIC16.63■□□□□ 0.25
KRT3P12035 SERBP1P3-201ENST00000459980 809 ntBASIC16.63■□□□□ 0.25
KRT3P12035 AC125807.1-201ENST00000483097 614 ntBASIC16.63■□□□□ 0.25
KRT3P12035 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.63■□□□□ 0.25
KRT3P12035 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC16.63■□□□□ 0.25
KRT3P12035 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC16.63■□□□□ 0.25
KRT3P12035 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.63■□□□□ 0.25
KRT3P12035 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 AC093028.1-201ENST00000622998 982 ntBASIC16.63■□□□□ 0.25
KRT3P12035 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.63■□□□□ 0.25
KRT3P12035 AC013268.4-201ENST00000637413 2228 ntBASIC16.63■□□□□ 0.25
KRT3P12035 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
KRT3P12035 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.63■□□□□ 0.25
KRT3P12035 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
KRT3P12035 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 AC104640.1-201ENST00000562617 2109 ntBASIC16.63■□□□□ 0.25
KRT3P12035 GRN-214ENST00000589265 1632 ntTSL 5 BASIC16.63■□□□□ 0.25
KRT3P12035 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
KRT3P12035 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
KRT3P12035 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.62■□□□□ 0.25
KRT3P12035 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
KRT3P12035 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
KRT3P12035 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
KRT3P12035 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT3P12035 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT3P12035 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT3P12035 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC16.62■□□□□ 0.25
KRT3P12035 AC051619.7-201ENST00000568314 623 ntBASIC16.62■□□□□ 0.25
KRT3P12035 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
KRT3P12035 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.62■□□□□ 0.25
KRT3P12035 SPDYE12P-201ENST00000618416 771 ntBASIC16.62■□□□□ 0.25
KRT3P12035 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
KRT3P12035 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.62■□□□□ 0.25
KRT3P12035 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 KRT18P28-201ENST00000453838 1332 ntBASIC16.62■□□□□ 0.25
KRT3P12035 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
KRT3P12035 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 51.1 ms