Protein–RNA interactions for Protein: Q9Y3E1

HDGFL3, Hepatoma-derived growth factor-related protein 3, humanhuman

Predictions only

Length 203 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3Q9Y3E1 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.2□□□□□ -0.14
HDGFL3Q9Y3E1 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AC022144.1-201ENST00000602255 1580 ntBASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AC044860.1-202ENST00000559481 777 ntBASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
HDGFL3Q9Y3E1 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 MIR770-201ENST00000390219 98 ntBASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AC114501.2-201ENST00000439631 535 ntBASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 AC132872.4-202ENST00000622924 2756 ntBASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC14.18□□□□□ -0.14
HDGFL3Q9Y3E1 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms