Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 GRN-214ENST00000589265 1632 ntTSL 5 BASIC14.22□□□□□ -0.13
CPNE4Q96A23 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC14.22□□□□□ -0.13
CPNE4Q96A23 AC112504.1-201ENST00000623415 1841 ntBASIC14.22□□□□□ -0.13
CPNE4Q96A23 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 ZNF324B-201ENST00000336614 2996 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC14.22□□□□□ -0.13
CPNE4Q96A23 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CPNE4Q96A23 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC14.22□□□□□ -0.13
CPNE4Q96A23 HYMAI-201ENST00000635591 3347 ntBASIC14.21□□□□□ -0.13
CPNE4Q96A23 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 AC136604.1-201ENST00000418535 575 ntBASIC14.21□□□□□ -0.13
CPNE4Q96A23 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 HNRNPUP1-201ENST00000554987 333 ntBASIC14.21□□□□□ -0.13
CPNE4Q96A23 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 AC008738.7-201ENST00000609744 511 ntBASIC14.21□□□□□ -0.13
CPNE4Q96A23 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CPNE4Q96A23 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC14.21□□□□□ -0.13
CPNE4Q96A23 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CPNE4Q96A23 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CPNE4Q96A23 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CPNE4Q96A23 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.21□□□□□ -0.14
CPNE4Q96A23 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
CPNE4Q96A23 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CPNE4Q96A23 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.21□□□□□ -0.14
CPNE4Q96A23 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CPNE4Q96A23 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC14.21□□□□□ -0.14
CPNE4Q96A23 LRRFIP1P1-201ENST00000498774 2246 ntBASIC14.21□□□□□ -0.14
CPNE4Q96A23 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC14.21□□□□□ -0.14
CPNE4Q96A23 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.14
CPNE4Q96A23 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.14
CPNE4Q96A23 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MIR600HG-201ENST00000449175 5984 ntBASIC14.2□□□□□ -0.14
CPNE4Q96A23 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 UGT1A2P-201ENST00000454886 866 ntBASIC14.2□□□□□ -0.14
CPNE4Q96A23 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
CPNE4Q96A23 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CPNE4Q96A23 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 81.2 ms