Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
PPP4R4Q6NUP7 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AC090616.6-203ENST00000579186 1945 ntBASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AC105250.1-201ENST00000509378 2057 ntBASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 WDR53-204ENST00000433160 887 ntTSL 5 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 HCG4B-203ENST00000450128 991 ntBASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 PAWRP1-201ENST00000451083 565 ntBASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AC010327.4-202ENST00000591484 748 ntBASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 LINC00552-201ENST00000625151 2579 ntBASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
PPP4R4Q6NUP7 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 ZFR2-201ENST00000262961 4756 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 NUDT4-201ENST00000337179 9753 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 IGLL3P-201ENST00000412472 434 ntBASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 SMN2-210ENST00000511812 867 ntTSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AC023511.2-201ENST00000618803 211 ntBASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AC004877.2-201ENST00000623941 599 ntBASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 AC007064.4-201ENST00000637740 555 ntBASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 SUCO-210ENST00000616058 5495 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC15.21■□□□□ 0.03
PPP4R4Q6NUP7 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 USP43-202ENST00000570475 3500 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
PPP4R4Q6NUP7 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.8 ms