Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC16.31■□□□□ 0.2
NEK3P51956 TSPY16P-201ENST00000449843 468 ntBASIC16.31■□□□□ 0.2
NEK3P51956 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.31■□□□□ 0.2
NEK3P51956 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.31■□□□□ 0.2
NEK3P51956 TEX28P1-201ENST00000613479 1221 ntBASIC16.31■□□□□ 0.2
NEK3P51956 TEX28P2-201ENST00000617764 1221 ntBASIC16.31■□□□□ 0.2
NEK3P51956 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
NEK3P51956 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 RAB34-223ENST00000636154 730 ntTSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC16.31■□□□□ 0.2
NEK3P51956 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
NEK3P51956 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
NEK3P51956 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC16.3■□□□□ 0.2
NEK3P51956 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 TSSK5P-201ENST00000423978 907 ntBASIC16.3■□□□□ 0.2
NEK3P51956 UGT1A2P-201ENST00000454886 866 ntBASIC16.3■□□□□ 0.2
NEK3P51956 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.3■□□□□ 0.2
NEK3P51956 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 AL079307.3-201ENST00000556114 283 ntBASIC16.3■□□□□ 0.2
NEK3P51956 MPI-209ENST00000564003 1195 ntTSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC16.3■□□□□ 0.2
NEK3P51956 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
NEK3P51956 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
NEK3P51956 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
NEK3P51956 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
NEK3P51956 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
NEK3P51956 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.29■□□□□ 0.2
NEK3P51956 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms