Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 CICP4-201ENST00000447359 2812 ntBASIC13□□□□□ -0.33
NKX2-1P43699 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13□□□□□ -0.33
NKX2-1P43699 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13□□□□□ -0.33
NKX2-1P43699 AC148477.4-201ENST00000613430 1793 ntBASIC13□□□□□ -0.33
NKX2-1P43699 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13□□□□□ -0.33
NKX2-1P43699 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 ZC3HAV1-203ENST00000464606 4776 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
NKX2-1P43699 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 RDX-218ENST00000544551 4117 ntTSL 2 BASIC13□□□□□ -0.33
NKX2-1P43699 PAN3-AS1-201ENST00000563843 1351 ntBASIC13□□□□□ -0.33
NKX2-1P43699 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC13□□□□□ -0.33
NKX2-1P43699 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 SART3-203ENST00000546611 1184 ntBASIC13□□□□□ -0.33
NKX2-1P43699 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC13□□□□□ -0.33
NKX2-1P43699 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC13□□□□□ -0.33
NKX2-1P43699 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13□□□□□ -0.33
NKX2-1P43699 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 ACAN-202ENST00000439576 8840 ntAPPRIS P2 TSL 5 BASIC13□□□□□ -0.33
NKX2-1P43699 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC13□□□□□ -0.33
NKX2-1P43699 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 AMT-204ENST00000427987 1646 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 AC005912.2-201ENST00000619492 2400 ntBASIC12.99□□□□□ -0.33
NKX2-1P43699 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC12.99□□□□□ -0.33
NKX2-1P43699 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC12.99□□□□□ -0.33
NKX2-1P43699 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 LAGE3P1-201ENST00000425356 484 ntBASIC12.99□□□□□ -0.33
NKX2-1P43699 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC12.99□□□□□ -0.33
NKX2-1P43699 MIR4321-201ENST00000592276 80 ntBASIC12.99□□□□□ -0.33
NKX2-1P43699 AL355877.3-201ENST00000622820 899 ntBASIC12.99□□□□□ -0.33
NKX2-1P43699 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 SFMBT1-201ENST00000394752 4548 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 SEZ6-203ENST00000360295 4306 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
NKX2-1P43699 DESI2-202ENST00000302550 4208 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
NKX2-1P43699 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC12.99□□□□□ -0.33
NKX2-1P43699 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.98□□□□□ -0.33
NKX2-1P43699 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
NKX2-1P43699 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
NKX2-1P43699 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-1P43699 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
NKX2-1P43699 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC12.98□□□□□ -0.33
NKX2-1P43699 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
NKX2-1P43699 JARID2-202ENST00000397311 5595 ntAPPRIS ALT2 TSL 2 BASIC12.98□□□□□ -0.33
NKX2-1P43699 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms