Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
BDNFP23560 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
BDNFP23560 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
BDNFP23560 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
BDNFP23560 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 AL121723.1-201ENST00000445194 1519 ntBASIC16.6■□□□□ 0.25
BDNFP23560 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BDNFP23560 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BDNFP23560 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BDNFP23560 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BDNFP23560 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
BDNFP23560 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
BDNFP23560 WBP2-203ENST00000433525 928 ntTSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC16.6■□□□□ 0.25
BDNFP23560 KRT17P7-201ENST00000451704 1104 ntBASIC16.6■□□□□ 0.25
BDNFP23560 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
BDNFP23560 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.6■□□□□ 0.25
BDNFP23560 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC16.6■□□□□ 0.25
BDNFP23560 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BDNFP23560 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
BDNFP23560 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
BDNFP23560 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
BDNFP23560 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.6■□□□□ 0.25
BDNFP23560 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
BDNFP23560 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
BDNFP23560 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
BDNFP23560 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC16.59■□□□□ 0.25
BDNFP23560 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.59■□□□□ 0.25
BDNFP23560 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
BDNFP23560 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.59■□□□□ 0.25
BDNFP23560 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC16.59■□□□□ 0.25
BDNFP23560 AC132938.2-201ENST00000579188 680 ntBASIC16.59■□□□□ 0.25
BDNFP23560 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC16.59■□□□□ 0.25
BDNFP23560 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 AL591163.1-201ENST00000641757 987 ntBASIC16.59■□□□□ 0.25
BDNFP23560 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
BDNFP23560 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms