Protein–RNA interactions for Protein: P12035

KRT3, Keratin, type II cytoskeletal 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT3P12035 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT3P12035 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.66■□□□□ 0.26
KRT3P12035 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT3P12035 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT3P12035 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT3P12035 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
KRT3P12035 NORAD-201ENST00000565493 5339 ntBASIC16.66■□□□□ 0.26
KRT3P12035 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
KRT3P12035 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT3P12035 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT3P12035 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT3P12035 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT3P12035 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT3P12035 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT3P12035 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT3P12035 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.65■□□□□ 0.26
KRT3P12035 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
KRT3P12035 TMBIM7P-203ENST00000641617 1718 ntBASIC16.65■□□□□ 0.26
KRT3P12035 AC126177.1-201ENST00000547829 2218 ntBASIC16.65■□□□□ 0.26
KRT3P12035 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.65■□□□□ 0.26
KRT3P12035 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT3P12035 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
KRT3P12035 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
KRT3P12035 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.65■□□□□ 0.26
KRT3P12035 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT3P12035 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.65■□□□□ 0.26
KRT3P12035 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.65■□□□□ 0.26
KRT3P12035 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.65■□□□□ 0.26
KRT3P12035 AC015911.4-201ENST00000588022 1070 ntBASIC16.65■□□□□ 0.26
KRT3P12035 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
KRT3P12035 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
KRT3P12035 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT3P12035 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 AC127383.1-201ENST00000444697 1800 ntBASIC16.65■□□□□ 0.26
KRT3P12035 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 PPT1-215ENST00000641471 2368 ntBASIC16.65■□□□□ 0.26
KRT3P12035 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.65■□□□□ 0.26
KRT3P12035 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT3P12035 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.64■□□□□ 0.26
KRT3P12035 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC16.64■□□□□ 0.26
KRT3P12035 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
KRT3P12035 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
KRT3P12035 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 MYB-242ENST00000618728 3545 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 RPL37AP1-201ENST00000412502 279 ntBASIC16.64■□□□□ 0.25
KRT3P12035 AL080243.2-201ENST00000418783 582 ntBASIC16.64■□□□□ 0.25
KRT3P12035 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT3P12035 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT3P12035 HLA-V-204ENST00000476601 1289 ntBASIC16.64■□□□□ 0.25
KRT3P12035 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
KRT3P12035 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.64■□□□□ 0.25
KRT3P12035 MIR6069-201ENST00000620069 79 ntBASIC16.64■□□□□ 0.25
KRT3P12035 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 ABTB1-206ENST00000468137 2065 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 AC009090.5-201ENST00000624886 2285 ntBASIC16.64■□□□□ 0.25
KRT3P12035 GSPT1-202ENST00000434724 7105 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 AC067930.6-201ENST00000623257 4947 ntBASIC16.64■□□□□ 0.25
KRT3P12035 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
KRT3P12035 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT3P12035 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT3P12035 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms