Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 UXT-AS1-201ENST00000590504 1525 ntBASIC13.95□□□□□ -0.18
LMX1BO60663 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
LMX1BO60663 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.95□□□□□ -0.18
LMX1BO60663 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 ARF6-201ENST00000298316 3865 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.94□□□□□ -0.18
LMX1BO60663 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.94□□□□□ -0.18
LMX1BO60663 PUDP-206ENST00000540122 825 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC13.94□□□□□ -0.18
LMX1BO60663 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.94□□□□□ -0.18
LMX1BO60663 RN7SL204P-201ENST00000582831 262 ntBASIC13.94□□□□□ -0.18
LMX1BO60663 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC13.94□□□□□ -0.18
LMX1BO60663 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 FOXO1B-201ENST00000504678 1527 ntBASIC13.94□□□□□ -0.18
LMX1BO60663 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC13.94□□□□□ -0.18
LMX1BO60663 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC13.94□□□□□ -0.18
LMX1BO60663 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.94□□□□□ -0.18
LMX1BO60663 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC13.93□□□□□ -0.18
LMX1BO60663 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC13.93□□□□□ -0.18
LMX1BO60663 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 KRT8P23-201ENST00000560090 1207 ntBASIC13.93□□□□□ -0.18
LMX1BO60663 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 AC012645.4-201ENST00000610691 1061 ntBASIC13.93□□□□□ -0.18
LMX1BO60663 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.93□□□□□ -0.18
LMX1BO60663 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 AC091951.1-201ENST00000512854 2465 ntBASIC13.93□□□□□ -0.18
LMX1BO60663 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC13.93□□□□□ -0.18
LMX1BO60663 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC13.93□□□□□ -0.18
LMX1BO60663 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC13.93□□□□□ -0.18
LMX1BO60663 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC13.93□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms