Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
SLC28A1O00337 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 AC004832.2-201ENST00000426397 482 ntBASIC15.24■□□□□ 0.03
SLC28A1O00337 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 RARRES2P9-201ENST00000565168 469 ntBASIC15.24■□□□□ 0.03
SLC28A1O00337 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC15.24■□□□□ 0.03
SLC28A1O00337 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.24■□□□□ 0.03
SLC28A1O00337 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 MTDHP5-201ENST00000598980 586 ntBASIC15.24■□□□□ 0.03
SLC28A1O00337 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.24■□□□□ 0.03
SLC28A1O00337 AC097359.3-201ENST00000603982 1210 ntBASIC15.24■□□□□ 0.03
SLC28A1O00337 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 AC055717.3-201ENST00000622967 595 ntBASIC15.24■□□□□ 0.03
SLC28A1O00337 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.24■□□□□ 0.03
SLC28A1O00337 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC15.24■□□□□ 0.03
SLC28A1O00337 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 STK33-217ENST00000534493 1895 ntTSL 2 BASIC15.24■□□□□ 0.03
SLC28A1O00337 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
SLC28A1O00337 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.24■□□□□ 0.03
SLC28A1O00337 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC15.24■□□□□ 0.03
SLC28A1O00337 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
SLC28A1O00337 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
SLC28A1O00337 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.23■□□□□ 0.03
SLC28A1O00337 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.23■□□□□ 0.03
SLC28A1O00337 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
SLC28A1O00337 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.23■□□□□ 0.03
SLC28A1O00337 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
SLC28A1O00337 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.23■□□□□ 0.03
SLC28A1O00337 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 AC069335.1-201ENST00000489972 472 ntBASIC15.23■□□□□ 0.03
SLC28A1O00337 FXR1-221ENST00000491674 365 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 KRT18P58-201ENST00000527480 1120 ntBASIC15.23■□□□□ 0.03
SLC28A1O00337 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.23■□□□□ 0.03
SLC28A1O00337 HNRNPUP1-201ENST00000554987 333 ntBASIC15.23■□□□□ 0.03
SLC28A1O00337 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC15.23■□□□□ 0.03
SLC28A1O00337 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.23■□□□□ 0.03
SLC28A1O00337 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15.23■□□□□ 0.03
SLC28A1O00337 TCAF2P1-201ENST00000291129 2421 ntBASIC15.23■□□□□ 0.03
SLC28A1O00337 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.23■□□□□ 0.03
SLC28A1O00337 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
SLC28A1O00337 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC28A1O00337 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC28A1O00337 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 RNASEH2B-202ENST00000422660 4830 ntTSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 HTR5BP-201ENST00000430851 1154 ntBASIC15.22■□□□□ 0.03
SLC28A1O00337 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
SLC28A1O00337 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC28A1O00337 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC15.22■□□□□ 0.03
SLC28A1O00337 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.22■□□□□ 0.03
SLC28A1O00337 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.22■□□□□ 0.03
SLC28A1O00337 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC28A1O00337 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
SLC28A1O00337 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
SLC28A1O00337 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15.22■□□□□ 0.03
SLC28A1O00337 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms