Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP3B1O00203 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP3B1O00203 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
AP3B1O00203 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
AP3B1O00203 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.99■□□□□ 0.15
AP3B1O00203 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.99■□□□□ 0.15
AP3B1O00203 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.99■□□□□ 0.15
AP3B1O00203 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
AP3B1O00203 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
AP3B1O00203 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
AP3B1O00203 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
AP3B1O00203 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
AP3B1O00203 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC15.99■□□□□ 0.15
AP3B1O00203 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 CPEB3-201ENST00000265997 4851 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
AP3B1O00203 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 CD81-202ENST00000381036 880 ntTSL 3 BASIC15.98■□□□□ 0.15
AP3B1O00203 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 UPF3AP3-201ENST00000420996 769 ntBASIC15.98■□□□□ 0.15
AP3B1O00203 BX842568.4-201ENST00000421222 227 ntBASIC15.98■□□□□ 0.15
AP3B1O00203 FAM58DP-201ENST00000428076 619 ntBASIC15.98■□□□□ 0.15
AP3B1O00203 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.98■□□□□ 0.15
AP3B1O00203 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 RN7SL828P-201ENST00000607615 303 ntBASIC15.98■□□□□ 0.15
AP3B1O00203 GOLGA2-215ENST00000639983 1038 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 CNOT10-202ENST00000331889 2573 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.98■□□□□ 0.15
AP3B1O00203 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
AP3B1O00203 KRT8P12-202ENST00000472924 1397 ntBASIC15.98■□□□□ 0.15
AP3B1O00203 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.98■□□□□ 0.15
AP3B1O00203 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC15.97■□□□□ 0.15
AP3B1O00203 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.97■□□□□ 0.15
AP3B1O00203 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
AP3B1O00203 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 AZGP1P1-201ENST00000411909 902 ntBASIC15.97■□□□□ 0.15
AP3B1O00203 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC15.97■□□□□ 0.15
AP3B1O00203 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC15.97■□□□□ 0.15
AP3B1O00203 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.97■□□□□ 0.15
AP3B1O00203 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC15.97■□□□□ 0.15
AP3B1O00203 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.97■□□□□ 0.15
AP3B1O00203 AC023141.5-201ENST00000458585 616 ntBASIC15.97■□□□□ 0.15
AP3B1O00203 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC15.97■□□□□ 0.15
AP3B1O00203 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC15.97■□□□□ 0.15
AP3B1O00203 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC15.97■□□□□ 0.15
AP3B1O00203 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.97■□□□□ 0.15
AP3B1O00203 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC15.97■□□□□ 0.15
AP3B1O00203 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
AP3B1O00203 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC15.97■□□□□ 0.15
AP3B1O00203 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms