Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
BRF2Q9HAW0 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
BRF2Q9HAW0 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.12■□□□□ 0.01
BRF2Q9HAW0 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 KRT8P44-201ENST00000441609 1350 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 LINC00554-201ENST00000564841 3011 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 CETN4P-206ENST00000642099 2168 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC004967.1-201ENST00000453589 447 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC069262.1-201ENST00000539058 672 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 SNHG9-202ENST00000564014 471 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 MIR6069-201ENST00000620069 79 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 AC144831.1-201ENST00000573312 2656 ntBASIC15.11■□□□□ 0.01
BRF2Q9HAW0 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
BRF2Q9HAW0 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 RPL5P21-201ENST00000404620 815 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SERBP1P3-201ENST00000459980 809 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 HLA-J-203ENST00000494367 1087 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 AC027612.4-201ENST00000605371 583 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 AL589739.1-201ENST00000607720 493 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 GPER1-207ENST00000619052 571 ntTSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 AL596257.1-201ENST00000641463 2694 ntBASIC15.1■□□□□ 0.01
BRF2Q9HAW0 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
BRF2Q9HAW0 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms