Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 AL645608.8-201ENST00000606034 2086 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ALOX12P2-203ENST00000570921 1945 ntBASIC15.29■□□□□ 0.04
VPS13AQ96RL7 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
VPS13AQ96RL7 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 TPM3P8-201ENST00000330554 643 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 RPS9P1-201ENST00000419943 583 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 TMCO5B-205ENST00000530020 894 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 ZNF124-206ENST00000543802 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 PCBP2-OT1-201ENST00000634357 590 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC136759.1-202ENST00000530858 2194 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AL133267.1-201ENST00000398220 340 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 FAU-202ENST00000434372 533 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AL391280.1-201ENST00000506969 1062 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC068587.8-201ENST00000641239 219 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 KLF2P2-201ENST00000416807 1039 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC100850.1-201ENST00000506768 649 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 FAM45A-201ENST00000361432 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 B4GALT3-201ENST00000319769 1911 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
VPS13AQ96RL7 AC022211.2-201ENST00000585075 2527 ntBASIC15.28■□□□□ 0.04
VPS13AQ96RL7 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 SLC44A3-209ENST00000532427 1912 ntTSL 2 BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 RN7SKP214-201ENST00000364208 315 ntBASIC15.27■□□□□ 0.04
VPS13AQ96RL7 DPM3-202ENST00000368399 517 ntBASIC15.27■□□□□ 0.04
VPS13AQ96RL7 RTN3P1-201ENST00000536295 711 ntBASIC15.27■□□□□ 0.04
VPS13AQ96RL7 AC242376.1-201ENST00000559033 726 ntBASIC15.27■□□□□ 0.04
VPS13AQ96RL7 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC15.27■□□□□ 0.04
VPS13AQ96RL7 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 AC116345.2-201ENST00000512837 523 ntBASIC15.27■□□□□ 0.03
VPS13AQ96RL7 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 FBXL12-202ENST00000585379 956 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 IGHA2-202ENST00000497872 1320 ntAPPRIS P5 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 PAX5-214ENST00000523241 1342 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 AC009093.2-202ENST00000620513 2079 ntBASIC15.27■□□□□ 0.03
VPS13AQ96RL7 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.27■□□□□ 0.03
VPS13AQ96RL7 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms