Protein–RNA interactions for Protein: Q96LD4

TRIM47, Tripartite motif-containing protein 47, humanhuman

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM47Q96LD4 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
TRIM47Q96LD4 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AC006019.1-201ENST00000425591 2470 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AL031731.1-201ENST00000642131 2094 ntBASIC18.47■□□□□ 0.55
TRIM47Q96LD4 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AGK-211ENST00000629555 2765 ntTSL 5 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AL391069.4-201ENST00000609583 481 ntBASIC18.47■□□□□ 0.55
TRIM47Q96LD4 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 KRT8P22-201ENST00000562317 1415 ntBASIC18.47■□□□□ 0.55
TRIM47Q96LD4 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
TRIM47Q96LD4 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 ACTG1P3-201ENST00000431775 1114 ntBASIC18.46■□□□□ 0.55
TRIM47Q96LD4 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AGER-214ENST00000538695 487 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AC020911.1-201ENST00000591038 578 ntTSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AL022328.1-201ENST00000610050 478 ntBASIC18.46■□□□□ 0.55
TRIM47Q96LD4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 CU634019.7-201ENST00000624153 1185 ntBASIC18.46■□□□□ 0.55
TRIM47Q96LD4 FP236241.2-201ENST00000624906 1185 ntBASIC18.46■□□□□ 0.55
TRIM47Q96LD4 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 MTHFR-217ENST00000641820 1569 ntBASIC18.46■□□□□ 0.55
TRIM47Q96LD4 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 GGT4P-201ENST00000623672 1708 ntBASIC18.46■□□□□ 0.55
TRIM47Q96LD4 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
TRIM47Q96LD4 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.45■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms